Gene detail

Detail information of GWHGAAEX009363/evm.TU.scaffold_245.16

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1983	Tomosyn and related SNARE-interacting proteins
nr	gi\|743781237\|ref\|XP_010920833.1\|	PREDICTED: uncharacterized protein LOC105044594 isoform X2 [Elaeis guineensis]
trEMBL	tr\|W5AZK5\|W5AZK5_WHEAT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_2AS_11627F727.2}
TAIR	AT5G05570	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000248	427168	464756	-

Transcript Sequence
>GWHTAAEX009363 AAGCAGGCTGAGCTCCGCGAATCTGCGCCAGGAGACAATTGCAGTGCACCTTCGGTAGCTTCTCGTGGGCAGAACGGGGCAGGAGGAAACTTTCGCACATCGAAGGGAAAAGCGATTAGAATTTGAGAGGCGAAACAGGACCAGGTCTTTCTTCATGTTCGTCAAGAGCCTGCTGCAGAAGGCCGCGGGGCAGAATTCACATCACGAGAATATGACATCAAGCGATCAAGATTTTCAAGTTGTTATGCACTATGGTATTCCTTATACTGCTTCTGTTCTTGCTTTTGATGCCGTCCAACGACTTCTAGCAATTGGAACTCTGGATGGTAGAATAAAGATAATTGGAGGTGATAACATTGAAGGTTTTTTTATTTCACCAAAGAAGGTGCCCTACAAATATTTAGAGTTCCTTGACAATAAAGGGTTCATTATTGGTGTTTCAAATGAGAATGACATTCAGGTTTGGGATCTCCAATGTAGGACATTATCTTATTCTTTATTGTGGAATACCAACATTACTGCCTTTGCTGTTATTAGCGGAACATATTTGATGTATGTTGGGGATGAGAATGGACTACTTTCAGTGCTGAAATACGATTCAGATGAAAACAGGCTGTTCAATATGCCTTACAATATTCCAGCAAAATCTCTGTCAGAATCAGTTGGTGTTTCAGTTCCTGACCAACAGCAGATAGTGGGAGTTTTACCACAACCTGGTACCTCTGGCACCAGGGTGATAATCGCATATGAGAACGGGTTGATTATACTCTGGGACATCTGTGAAAGTCATTCAGTTGCAGTGAGAAGTTCTAGGGATCTGCAGCAGAAGGACAAGGAACATAGTGAATCTTTCTCTGAAGCTTCCAATGACCTTACTGATACTGTTTCCCATGACAATGAGGAGAAAGAGATTTGCTCCATTTGCTGGGTGTCTAACTCAGGCTCCGTCCTTGCTGTTGGTTATATTGATGGTGATATATTATTATGGGATCTTTCAGTAAGTTCTCCAATCAAAGGAAAAGGGAGTAATGTATCATCCAAGAATGTTGTTAGGTTGCAACTAGCTTCTGGAGATCGCAGGCTTCCTGTCATTGTTTTGCACTGGGCTGCTAAAGCTAAGGCAAATAATGATAAAGGCGGGCAACTGTTTATTTACGGTGGTGATGATATGGGGTCCGAAGAAGTTATAACGGTTCTTAATCTTGAATGGTCCACTGGTATAGATACCGTAAAATGCATCTCTGACACAGAACTTAATCTTGACGGATCCTTTGCAGATATGATATTAGTACCTGATACTGGACCAGCAAATCATAACTCCAATGCTGCACTTTTTGTATTAACCAACCCTGGACAAATAAATGTTTATGATGACGCAGCACTTTCAATGCTAAAATCTGCAGAGAGTGATTTTCATGCTTATGCTGAAAAGTTTCCTGTTGTAGTGCCCACTATTGATCCTCGCATTACTGTTACAAAGCTATGTTTTTTACCAATGATCCAGGACTCCTTTAAGGACTTATTAAAGAAAGCCTTTGCTAAGTTAAACATAGCATCAACATTGTCTACTGGTACAAAATGGCCTTTGACTGGGGGTGTCCCTGGTGAAGCGATTGTTGATGAAGACAATGACATTAATAGACTATACATAGCAGGCTATCATGATGGATCTGTTAGAATGTGGAATGCTACACATCCCATCCTAACACTTGTGCTAGTATTAGAAGGAAAGGTCACAGGCGTTGAAATGGATGGTCAAAATGCATCGGTGTCAGCATTGGATTTCTGCCCCTTAAGTATGAATTTTGCTGTCGGGAATGAGTTTGGTCTTGTTCGACTCTATAAGCTTCAGGAAGGAGCTAATCGTCCAAATATTTTTTTTGTGAATGGAAATAAGCAAGAAGTTTTTCCTGTAAACCAAGGAGAAGGGTTTCATTATTCTGCAGTGTTCACTCTAAGATCACCCATCCGAACACTGCATTTTGCTAAGTGTGGGGAAAAATTAGCTGTTGGGTTTGACAGTGGTCAGGTTGCAATGCTGGATCTAACTTCGTATGCAACTATATTTCAAACAGATTGCTTATCTAGCACAAGTTCTCAGGTTATATATATTTCAAACGAAGTGGTTCCACAATTCAGCATGATATGCAGTCGAAAGAATTCAAGGCCTGAAGATCTTAAAGAGTCTTCAGAAGGTTTAATGTTCATTTTAACCAAGGATGGTCATGTTACTGTTATTGACAGCATAAGAGGCACTACATTGAATTCACTGTCAATGCAGAAAAAAAGGAAGTCAGCAGCAATTTCCATGTATGTTATAGATGGTACCATATTGGAATTGTCTGACGAGAAGCCGCGAGCTATAGACGATTGTTCATCCAAAAGTGATTCGAAAGATGAAGACGATTTTGGCAGCACCAGAAAACTAAGAATTGATCAGTATTCGAGTGATGCATCTATCTCTTCCGAATATTTATTTTATCCACTTCTTGTGATTTGTTTTGAAGATTCTATACGATTGTGCTATGTGAAATCTGTGATACAGGGGGAGAGGCATTTCTGTTACAAAATTAAACTTGCTAAACATTGCTGCTGGTCAACAATTTTCAAGAAAAGGGTTGAGAAAACTTGTGGCCTCATTTTGCTTTACCAGACAGGAGATCTTGAGATTAGGTCTTTGCCAAATCTAGAAGTTGTTGCTGTGAGTTCCTTGATGTCAATTTTGCGGTGGAGCTTCAAGACAAACATGGAGAAGACAATGAGTTCATATGATAATGGCCAACTTACTTTAGTAAATGGCTCTGAAGTTGCTTTCATCTCGATTTTGGCCTGCAAGAACGACTTCAGAATTCCAGAATCTCTGCCTTGCCTTCATGACAAAGTTCTTGCTGCTGCTGCTGATACTTCCATTTCTTTTTTTAGTCATAAAAACAAACAGGAGATATCTTCGCGAATTCTCGGTAGTTTCCTCAAAGGACTTAAGGGGAGTAGCAGAGCAGAGGGAAATGTAGATATCTCTGATACTAACACAAAGTTCAGTAAAGTAGAGGGCTACTTCTTGAAAGATCCTTTCTTAGAACCATCATTGGGTGCAAATAACAGCCAAGTTGAACTGAGCATTGATGACATAGAGATTGATGATAACACACCTTTATCATCATTCAGTTCATCCAAAGCTTCCAGCGCTTCATCCGATGCCAAGAAGCACAAGAAAAAAGTTAAAGTGTCCACAGCTGCTGCAGAAGATAGTGATGAGAGGGAGAAGCTATTTGAGGGAGCTGCCAATTCTATGAAGCCCAGAGTCAGAACTACTCAAGAAATTATGACCCAGTATAAGTTTGGAGGGGATGCTGTGGCAGCAGCAACGCATGCAAAAGATAAACTAGCAGAAAGACAGGAAAAGCTTGAGAGGTTAAAGAAAAATACTGAAGAGTTGCAAAGTGGAGCAGAAAATTTTTCTCAGTTAGCCAATGAACTTGCCAAGACAATGGAGAACAAGAAATGGTGGAAAATTTAATATATAACATTACACTCTTGTAATTTATTGCTTTTAATATATATATATACATTGAAAAAAATAAGAAAAGTGTATTTTAGTGGTTTTATTTTTGGAGAATGTTAATATAAATTATTTTGAAAGTCAACATATATACTAATGTAGTGTTCATAGTTCAATGGTGAATAATGAATTTGATTGGGAATTTCATGGCCCAGGAACTGGCCCAGCCTGCAAATATGCCCAGGTCAGGCTCAGACCAACATATTCCAGCCCGGTTAGCCTTTCGGCTAGTTCTGCCTCTGTATATCTAATC

Network for GWHGAAEX009363

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00957.20	Synaptobrevin	1075	1117	1.70E-06

Protein Sequence

>GWHPAAEX009363
MFVKSLLQKAAGQNSHHENMTSSDQDFQVVMHYGIPYTASVLAFDAVQRLLAIGTLDGRIKIIGGDNIEGFFISPKKVPYKYLEFLDNKGFIIGVSNENDIQVWDLQCRTLSYSLLWNTNITAFAVISGTYLMYVGDENGLLSVLKYDSDENRLFNMPYNIPAKSLSESVGVSVPDQQQIVGVLPQPGTSGTRVIIAYENGLIILWDICESHSVAVRSSRDLQQKDKEHSESFSEASNDLTDTVSHDNEEKEICSICWVSNSGSVLAVGYIDGDILLWDLSVSSPIKGKGSNVSSKNVVRLQLASGDRRLPVIVLHWAAKAKANNDKGGQLFIYGGDDMGSEEVITVLNLEWSTGIDTVKCISDTELNLDGSFADMILVPDTGPANHNSNAALFVLTNPGQINVYDDAALSMLKSAESDFHAYAEKFPVVVPTIDPRITVTKLCFLPMIQDSFKDLLKKAFAKLNIASTLSTGTKWPLTGGVPGEAIVDEDNDINRLYIAGYHDGSVRMWNATHPILTLVLVLEGKVTGVEMDGQNASVSALDFCPLSMNFAVGNEFGLVRLYKLQEGANRPNIFFVNGNKQEVFPVNQGEGFHYSAVFTLRSPIRTLHFAKCGEKLAVGFDSGQVAMLDLTSYATIFQTDCLSSTSSQVIYISNEVVPQFSMICSRKNSRPEDLKESSEGLMFILTKDGHVTVIDSIRGTTLNSLSMQKKRKSAAISMYVIDGTILELSDEKPRAIDDCSSKSDSKDEDDFGSTRKLRIDQYSSDASISSEYLFYPLLVICFEDSIRLCYVKSVIQGERHFCYKIKLAKHCCWSTIFKKRVEKTCGLILLYQTGDLEIRSLPNLEVVAVSSLMSILRWSFKTNMEKTMSSYDNGQLTLVNGSEVAFISILACKNDFRIPESLPCLHDKVLAAAADTSISFFSHKNKQEISSRILGSFLKGLKGSSRAEGNVDISDTNTKFSKVEGYFLKDPFLEPSLGANNSQVELSIDDIEIDDNTPLSSFSSSKASSASSDAKKHKKKVKVSTAAAEDSDEREKLFEGAANSMKPRVRTTQEIMTQYKFGGDAVAAATHAKDKLAERQEKLERLKKNTEELQSGAENFSQLANELAKTMENKKWWKI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0005515	Molecular Function	protein binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.420
SRP064423	SRR2545915	Juvenile tuber	34.160
SRP108465	SRR5643513	five period of Gastrodia elata	19.230
	SRR5643514	five period of Gastrodia elata	21.280
	SRR5643515	five period of Gastrodia elata	18.760
	SRR5643524	five period of Gastrodia elata	19.490
	SRR5643525	five period of Gastrodia elata	31.410
	SRR5643528	five period of Gastrodia elata	33.880
	SRR5643658	five period of Gastrodia elata	43.460
	SRR5643659	five period of Gastrodia elata	13.890
	SRR5643660	five period of Gastrodia elata	16.380
	SRR5643661	five period of Gastrodia elata	13.150
	SRR5643662	five period of Gastrodia elata	15.190
	SRR5643663	five period of Gastrodia elata	16.020
	SRR5643664	five period of Gastrodia elata	17.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.150
SRP279888	Gastro	Gastrodia elata tuber	19.05
	Juven	Juvenile tuber	31.66
	Mother_Gastro	Mother tuber of Gastrodia elata	20.83
	Mother_Juven	Mother tuber of Juvenile	35.42