Detail information of GWHGAAEX009365/evm.TU.scaffold_245.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521180262|ref|YP_008164038.1| | 9.00E-35 | cation transporter [Psychrobacter sp. G] |
| KOG | KOG1482 | 7.00E-173 | Zn2+ transporter |
| nr | gi|672109996|ref|XP_008793034.1| | 0 | PREDICTED: metal tolerance protein 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q688R1|MTP1_ORYSJ | 0 | Metal tolerance protein 1 |
| trEMBL | tr|J3M3N0|J3M3N0_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G12040.1} |
| TAIR | AT2G46800 | 7.00E-173 | zinc transporter of Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000248 | 519016 | 524676 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009365
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01545.20 | Cation_efflux | 58 | 330 | 3.90E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 95.550 |
| SRR2545915 | Juvenile tuber | 115.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.510 |
| SRR5643514 | five period of Gastrodia elata | 36.790 | |
| SRR5643515 | five period of Gastrodia elata | 44.490 | |
| SRR5643524 | five period of Gastrodia elata | 38.800 | |
| SRR5643525 | five period of Gastrodia elata | 27.270 | |
| SRR5643528 | five period of Gastrodia elata | 30.340 | |
| SRR5643658 | five period of Gastrodia elata | 30.930 | |
| SRR5643659 | five period of Gastrodia elata | 52.850 | |
| SRR5643660 | five period of Gastrodia elata | 64.720 | |
| SRR5643661 | five period of Gastrodia elata | 52.510 | |
| SRR5643662 | five period of Gastrodia elata | 63.110 | |
| SRR5643663 | five period of Gastrodia elata | 66.860 | |
| SRR5643664 | five period of Gastrodia elata | 71.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 60.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 72.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 84.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 68.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 68.57 |
| Juven | Juvenile tuber | 64.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.40 | |
| Mother_Juven | Mother tuber of Juvenile | 64.13 |