Gene detail

Detail information of GWHGAAEX009366/evm.TU.scaffold_245.20

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743781821\|ref\|XP_010920987.1\|	2.08E-171	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105044698 [Elaeis guineensis]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	8.00E-07	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|M0U5G2\|M0U5G2_MUSAM	9.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP01500_001}
trEMBL	tr\|M0U5G2\|M0U5G2_MUSAM	4.00E-34	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP01500_001}
TAIR	AT5G58610_2	2.00E-81	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000248	558402	590717	+

Transcript Sequence
>GWHTAAEX009366 ATGGCGTCGGAGGCGAGGGACATAGCGGACAACAATGGCGACGGCAGAAAGCTTCATATAGGGGAGAAAGTCGAGGTGCTTCGTTCTGCAGAGCATTGTCGTGAATCGTGGTTTATTGGTGTGGTAACGGATTGTCGGAACTGCTCCCGCGTAGTTGAATTAACCGATTTGATGCACAACACCGTTTACTCCAGAATTGTCGTATCAGTCCCAATATCCGAAGCTGTGCAAGGAATTTATAGCAAGGTGGAGGATAGTTACATTGGCAGGATAAGGCCTCTACCTCCCCGGCATAACCTTGAGGAGTCCGAATTGAATTTTGGTCTCTGTGTCGATGTTTTCATCAAAGATTCCTGGAGGGAAGGTGTTGTGATTGGGCGGAATAAAGATTCAACCAAAAAGTTGATTTTTTTTCCAGGCACTAGCGATGAGGTGCTGGTTCCTGCCTCGAAGATTCGTCCGACTCAGGTGTGGAATGAAGTTTCAGGGCATTGGAGCCCCCGGGGTCGGTGGCTCTTCCTTGAAATCATCAGAAGTTATAAGCAGAAGAAATTTTCTCTACTAGAAATTCAGGAGATGTGGCTTCACCTGAAAGCTACAACTGTTTATTGCGAAAAGATTAAAAATTGGCATTATGGGTCGAAGCTCACATGGAAAGAGTTGGTATTAGACGTGATCCGCGGGATGAATTCTGCTGTTAGCAGTTTATCCGCTGTTCAATCTTCTTCATATGTTCCACCGCTCGATGGGCACCTGGAACATGAAAGAGCAGGAAGCTCATCCGAAGCGGGGGCTCCATGTCTTGCATCAACTAGTCATACTTGTAACTGCTGTACCACAGCCCCAAACAAGCACAAGGCAGCTAGAACTGTCTGTTGCAGAAAACGAAAGCTTGCAGAGCATCACATTTTGGTGTCAGCACAAAGGCTTTTACGTAGAAGAGGTGGATGCATATCTGCTGTAGAATCCTCTGAAGAAATGAAAGGGGCAGATGAGAATCAAGAAGATGAAAGGCTTTTGAACTGTGATGGGGACAACGAAATTCTGCTATCTGGTGCTGACGATGTCAAAGTTAGACATGGAAAGAAAAAGACAAAGAAAAGATTAGCACCAAAGACATGGAAACCTGTGACACTCAAAGGTGAATACTGCCATGAATTATCGAAGCTGTCAGGCTTTTCCCATGAAGAATTTCAAAATCATTCGGTGAACAAGTTATTGAAGCTAGCTTGTACCGGAATTAAGAAGGTGAAGTTGAGAAAACACCTTGTGTCTATGGGTTGGAGGATTGAATATACATTTGACACTACGACAAAATTTCGATATATATCTCCTGAACAAAGTACCTATTACTCTCTTATAAAGGTTATCCAATATTTGCTGAGGGAGAAAACATATGTGCGTGGCATGGTTGGAGATAAGACAAACTCAATAGACATCAACAATGAGTTAAAAGTGATTCCTTCTGCCAAGACAGATTTTGTCCCTTCAAAGCATGATACATTAATGCATCCCATGGATGTTGAGATTTCTCCAGCCCAGCAAACTGCAGAGCAGCAGCATCACATATCTGATTCTTTTGAGTTCATGGGCCATAAAATTATGCAGTCTAGTTTCACTGAACTTATTGGCGAAAATGCACAACCTCCTGGCAGCTGCTTGACAACGATTGATGAAACTCTGGACTCGAAGGTGAACAATACATATGAAAATACCAAATCATCACATTTAGAAGAAGGTGTTCTAAAGGCATACATGGATCTCATTGATTTGCTAAAGATCAACCCAAAGTTTTCACCTGCTATTGTAAAAGAACTGAGGTCAAAAACCAAGGCTTATCTATTGGAAAAGGGATGGAAACTTTGGCTGTACACCAAGAAGGTGAAACCAGAATTACGCTACACTTCTCCGGACGGCAGGACTTATGTATCACTTAATTCTGCATGCAAGGGATACTGGAAAGAACTATATGGTGAACACACTGGGAAAATGTCACTTGAAAGTATTGATGATGACAAAAGTTTATATTGCGTGTCAGTTGATTCGACAATTAGTACTCCTAACAAGGAAAACATTTATGAACTCTCGTGCAATTCAGGCTTATTGACCGCAGTTAATCAGACATCTCTTGAGAGGCAAAAAGAAGATTCACAGCAAGGATATAAATTTTCTTCCAATTTATTTTTTTCCGATGACTTTGATTCTAAAGAGCAAATAGAAATAAGGAAAGAGTTAAAGAGGAGGAAAGTAATGTTTCCAAATACTTGTTTGACATTGGATAAACAATCCCAAAGTCATGTGTCTCTGCATTATTGTGACCAAAAACATGCTGTTAAGATGGGTGCTTTTGACTCCTCTAGTGGTTATAAGCCAACTAGGGGAAGTCTTTCATCACGTGTACTGCGTTCAGGAAAAAGATCACGATGGGCCATGGTCCTGTCTTCTAAAGATCAAGTTGCTAAGTCGGTACTGTCCTGGCTGATTGATAAAGACATTGTATTACCAAGGCAGAAGGTCGCATTTGTTAGACAAACTGATAGTCTCATAATGAAAGTAGGTTGGATAACTCATGACGGGATTAAATGTAGATGTTGTCAAAATGTATTTCCTATTTCCCAGTTTGGTGCTCATGCTGGAAGCAGAAATTCTAGACCTTCTGCTAGCATGATTTTGCAAGATGGTAGGTCATTGTTAGATTGCCAAAAGCAGGCTATGAGTTTCTTCAAGCCTAATGGATTTCAACCTGCAAGATTAAGAAGTGACTATTCCAACTATGAAGCTGATGATTTATGTACCATCTGTCATGATGGTGGTCTGATAATGCTATGTGATCTATGCCCATCTGCATTTCATCCAACTTGTATTGGTTTAGAGGATGTACCTGATGGTAAATGGTTTTGCCCATCATGTCGTTGTGGCATTTGTAGTCTTAACGAATTTAATTGTGATACCGAACATTTCACTGAGAATTCAGGGATTATTTGTGATCAATGTGAACGACAATATCATGTTGGTTGCTTGCAAAAACAAGGGTTGATACTAAATGAGTGTCCAACAGGGACTTGGACTTGCAGTAAAGCATGTTTCAAGATAATTCAACATCTTCGATTACTTCTTGGGAAGTTCAATCCCACTAATGCAAAAGGATTACGTTGGACCCTTTTGAGATCGACTAGTGAAGATGATGGAAAACTTGATGTGGATGCTATAGTTGAGAATTCTGGAATGCTCCATATTGCCCTTGATGTTTTACATGAATGCTTTGAGGCTATGGTCGAAGCACGCACACAAAGCGATCTTGCCACTGATATTATTTTCAATAAAACTTCTGAGCTGAATAGATTGAACTTCTGGGGTTTTTATACAATGCTTTTGATGAGCGGAGATGAGCTCATATCAGTGGCTAATTTCAGGCTGCTGCTGCCAGCCGTTCCAGAGCTGCTGAAAACGTGGATCTCGTCTTTCGGCTTCTCGGAGGTGTCGTGCTCTGAAAGATTGGGGCTTTTGGAGCACCCAATACTCACCTTTCAGGGCACCACTCTGTGCCACAAGTTCCTCGTCAGATAG

Network for GWHGAAEX009366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05641.11	Agenet	21	96	4.40E-07
PF16135.4	Jas	821	888	4.70E-16
PF00628.28	PHD	931	972	1.00E-07

Protein Sequence

>GWHPAAEX009366
MASEARDIADNNGDGRKLHIGEKVEVLRSAEHCRESWFIGVVTDCRNCSRVVELTDLMHNTVYSRIVVSVPISEAVQGIYSKVEDSYIGRIRPLPPRHNLEESELNFGLCVDVFIKDSWREGVVIGRNKDSTKKLIFFPGTSDEVLVPASKIRPTQVWNEVSGHWSPRGRWLFLEIIRSYKQKKFSLLEIQEMWLHLKATTVYCEKIKNWHYGSKLTWKELVLDVIRGMNSAVSSLSAVQSSSYVPPLDGHLEHERAGSSSEAGAPCLASTSHTCNCCTTAPNKHKAARTVCCRKRKLAEHHILVSAQRLLRRRGGCISAVESSEEMKGADENQEDERLLNCDGDNEILLSGADDVKVRHGKKKTKKRLAPKTWKPVTLKGEYCHELSKLSGFSHEEFQNHSVNKLLKLACTGIKKVKLRKHLVSMGWRIEYTFDTTTKFRYISPEQSTYYSLIKVIQYLLREKTYVRGMVGDKTNSIDINNELKVIPSAKTDFVPSKHDTLMHPMDVEISPAQQTAEQQHHISDSFEFMGHKIMQSSFTELIGENAQPPGSCLTTIDETLDSKVNNTYENTKSSHLEEGVLKAYMDLIDLLKINPKFSPAIVKELRSKTKAYLLEKGWKLWLYTKKVKPELRYTSPDGRTYVSLNSACKGYWKELYGEHTGKMSLESIDDDKSLYCVSVDSTISTPNKENIYELSCNSGLLTAVNQTSLERQKEDSQQGYKFSSNLFFSDDFDSKEQIEIRKELKRRKVMFPNTCLTLDKQSQSHVSLHYCDQKHAVKMGAFDSSSGYKPTRGSLSSRVLRSGKRSRWAMVLSSKDQVAKSVLSWLIDKDIVLPRQKVAFVRQTDSLIMKVGWITHDGIKCRCCQNVFPISQFGAHAGSRNSRPSASMILQDGRSLLDCQKQAMSFFKPNGFQPARLRSDYSNYEADDLCTICHDGGLIMLCDLCPSAFHPTCIGLEDVPDGKWFCPSCRCGICSLNEFNCDTEHFTENSGIICDQCERQYHVGCLQKQGLILNECPTGTWTCSKACFKIIQHLRLLLGKFNPTNAKGLRWTLLRSTSEDDGKLDVDAIVENSGMLHIALDVLHECFEAMVEARTQSDLATDIIFNKTSELNRLNFWGFYTMLLMSGDELISVANFRLLLPAVPELLKTWISSFGFSEVSCSERLGLLEHPILTFQGTTLCHKFLVR

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.800
SRP064423	SRR2545915	Juvenile tuber	10.230
SRP108465	SRR5643513	five period of Gastrodia elata	4.080
	SRR5643514	five period of Gastrodia elata	3.820
	SRR5643515	five period of Gastrodia elata	2.830
	SRR5643524	five period of Gastrodia elata	2.980
	SRR5643525	five period of Gastrodia elata	3.060
	SRR5643528	five period of Gastrodia elata	2.280
	SRR5643658	five period of Gastrodia elata	3.050
	SRR5643659	five period of Gastrodia elata	5.000
	SRR5643660	five period of Gastrodia elata	4.680
	SRR5643661	five period of Gastrodia elata	3.710
	SRR5643662	five period of Gastrodia elata	4.270
	SRR5643663	five period of Gastrodia elata	4.080
	SRR5643664	five period of Gastrodia elata	4.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.310
SRP279888	Gastro	Gastrodia elata tuber	3.28
	Juven	Juvenile tuber	6.62
	Mother_Gastro	Mother tuber of Gastrodia elata	1.79
	Mother_Juven	Mother tuber of Juvenile	3.36