Detail information of GWHGAAEX009370/evm.TU.scaffold_245.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297621203|ref|YP_003709340.1| | 2.00E-18 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0698 | 3.00E-119 | Serine/threonine protein phosphatase |
| nr | gi|743842731|ref|XP_010937884.1| | 6.71E-164 | PREDICTED: probable protein phosphatase 2C 32 [Elaeis guineensis] |
| Swissprot | tr|O80871|P2C25_ARATH | 1.00E-119 | Probable protein phosphatase 2C 25 |
| trEMBL | tr|M0SWG3|M0SWG3_MUSAM | 1.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P07340_001} |
| TAIR | AT2G30020 | 3.00E-119 | Protein phosphatase 2C family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000248 | 612653 | 615860 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009370
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 145 | 390 | 2.30E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043169 | Molecular Function | cation binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.120 |
| SRR2545915 | Juvenile tuber | 1.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.180 |
| SRR5643514 | five period of Gastrodia elata | 3.540 | |
| SRR5643515 | five period of Gastrodia elata | 2.750 | |
| SRR5643524 | five period of Gastrodia elata | 1.920 | |
| SRR5643525 | five period of Gastrodia elata | 18.340 | |
| SRR5643528 | five period of Gastrodia elata | 13.900 | |
| SRR5643658 | five period of Gastrodia elata | 12.350 | |
| SRR5643659 | five period of Gastrodia elata | 2.460 | |
| SRR5643660 | five period of Gastrodia elata | 2.470 | |
| SRR5643661 | five period of Gastrodia elata | 3.570 | |
| SRR5643662 | five period of Gastrodia elata | 5.970 | |
| SRR5643663 | five period of Gastrodia elata | 4.490 | |
| SRR5643664 | five period of Gastrodia elata | 6.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.97 |
| Juven | Juvenile tuber | 0.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.32 | |
| Mother_Juven | Mother tuber of Juvenile | 8.87 |