Detail information of GWHGAAEX009373/evm.TU.scaffold_245.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146300991|ref|YP_001195582.1| | 2.00E-15 | leucine-rich repeat-containing protein [Flavobacterium johnsoniae UW101] |
| nr | gi|695029912|ref|XP_009402395.1| | 0 | PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|C0LGU7|Y5458_ARATH | 2.00E-145 | Probable LRR receptor-like serine/threonine-protein kinase At5g45840 (Precursor) |
| trEMBL | tr|M5X7A3|M5X7A3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ21834.1} |
| TAIR | AT5G45840 | 1.00E-146 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000248 | 692402 | 701376 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009373
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 29 | 65 | 1.30E-12 |
| PF13855.5 | LRR_8 | 92 | 151 | 6.20E-11 |
| PF07714.16 | Pkinase_Tyr | 351 | 496 | 4.10E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.810 |
| SRR2545915 | Juvenile tuber | 18.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.770 |
| SRR5643514 | five period of Gastrodia elata | 43.240 | |
| SRR5643515 | five period of Gastrodia elata | 38.710 | |
| SRR5643524 | five period of Gastrodia elata | 39.590 | |
| SRR5643525 | five period of Gastrodia elata | 60.750 | |
| SRR5643528 | five period of Gastrodia elata | 54.330 | |
| SRR5643658 | five period of Gastrodia elata | 73.330 | |
| SRR5643659 | five period of Gastrodia elata | 30.930 | |
| SRR5643660 | five period of Gastrodia elata | 34.020 | |
| SRR5643661 | five period of Gastrodia elata | 29.530 | |
| SRR5643662 | five period of Gastrodia elata | 32.550 | |
| SRR5643663 | five period of Gastrodia elata | 33.740 | |
| SRR5643664 | five period of Gastrodia elata | 34.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.15 |
| Juven | Juvenile tuber | 22.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.32 | |
| Mother_Juven | Mother tuber of Juvenile | 24.88 |