Gene detail

Detail information of GWHGAAEX009374/evm.TU.scaffold_245.28_evm.TU.scaffold_245.29

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2390	Uncharacterized conserved protein
nr	gi\|672168216\|ref\|XP_008804102.1\|	PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0SDC5\|M0SDC5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P10080_001}
TAIR	AT5G58510	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000248	703118	790175	+

Transcript Sequence
>GWHTAAEX009374 TTATAATTGATGTTATCCAGAACGAATCCCGAGATGCGTAAAATATATGAACGAATCGAGATAACGAGCTGAATCCAGTTGCGTTCATCTTCAAGGTCCGAACGAATTGAGATCACGAGCTTCGTTTCTTCGAGACTCGAGATTGCGAGCTTCATTTGCGAGAACAAGCTGCAAATCGAAGGTGAATCACGGAGACGAGCGGCGATTCGTGGAGACGAAGCTGCGAATCGAAGGCGAATCGTGGAGACGCGCTGCGATTCCGTTTGTTCGCGGAGACGCTGAGCCGAAGCTTCGTTTGCTTCAGGTCTCCGCTGCTGTTGTCATTTGCGTAAAACGGTATTTCTGAAAACAATTTGCCGTGGTCATTAGGTAAAACTTTTACTCAAATTTTACTTCATTTTATTAAAGAGTTGTGTGTTATTCAAATAAAAATCCCAATTTTAATTTAATCCAATTTTATCTTGTGACAAGTAGCACGTCTCAAAAATTAATTTCAACGTTGATATAAACTGTTGGCGCTGGCTCAACCTGCAATTGGTTTCAAAAATGGCAGCCTACTGAAGCGATCCTTTAACATCACCATAGTTTTTGTAGTGCCGTCCGAAGCAACTGGCCATGGAGTCCTTTACCAGTACATTGGACACGGACGACACGGAAGAAACCCTAGAACAGATTGAGGGCTTTGATGATTTCACCATTGCCTCAACATGGGAAAGATTCATATCAGAAATAGAAGCTATTTGTCGGCTTTGGATTGCTGATGGCCGTAAAAATCTATTGGATAAAGGGGCAGAATGCTTGGCATCAAGAAGAAACTTGTGTAGGATCAAATGCAAGCTGAAACATGGTGCAAAATTATATGCCATGGAGTATCACTTTTATATCCATGACAATGATAAAGCTGGACAATGGGATGACGATTTACATAACTTGCAGCTATTTTTCGGTGTAACTGAGTTTTTGGTTATATCACCTATAAATGCTAATGGTGTTGTTTTAGATACTCCAGAATCAAGCAAACTTTTAAGCGCTGTTGCAATTGCTTTATCAAATTGTGGCAGTAATTGGCCTGCTTTTGTTCCTGTGCATGATCCTTCTCGAAATTCATATATTGGGATTCAGAATATGGGAACTACCTTCGCTCGAAGATTTGACTCTGATAGGATTGGTAGCCAAGTTCCCATTAGGCTTTTACACTTGGAGGGGCTCTATGAGCTATTTGTCTCAAAATTTGCCTTAACTGCTGTAGATTTTTCTACGGATAATTTTAGTGTTCAGTCTTCAATGAGACTTATCTATAGAACGCCCCCCTATGCTGATGATGAGACAGAGAGCTTGAATCACATTAACAAGGAAAGAAAAGGGGAAGCGGCTGAGCTTAGTCATATTAAGAAACAATGGGATGATGATTGCCCTTGGGCAGAGTGGTATTTTTCTGAGGACCCTATTGAAGGGTTTGAGCTGACTGCTATTTGGCCAAATAAGATGTTTGAAGGTTCTGTTGAGATGGCAGAATTGGAAAATGAATCACCATTTGATGCTGAGAAGTGGCTTCTTCTTCCTATAATATCTCAAAATATGAGCAGTGTGTCTGTCGGCAAGCTTGGATTTTCCAAGCAACTTGGCATTTTGGTATCTGCATTGGACAAGTCATTTGAAGCCAAATATTTAGAAGATTTTGTGTCAGCTGATAACTTGGGTTCGGATATTTCTAAGCCTTCAGATGTTATACCACCACCAACAGTTATAGATCGCATCCTTAAAGAGCTTTTTCCTGATGGAGTCGAAAGGCTTATTAATTGTGTAGACTCTGGGAGCAGAAGCTCTCGTTGTGTCAAAGGTGCTCCTCTAGGCTCTTTATTCGCCCAATTCTGTTTGCATCTGTTGTGGCTTGGGAATTGCAACATTAGAGCAATTGCCACATTATGGATTGAATTTGTGAGAGAAGTTCGTTGGTTCTGGGAGGAGTCACAGCCGTTGCCAAAAATGTCTCCTTCCTCGAGCATCGATCTGTCCACTTGTTTGGTGCATCAGAAACTGCAGATGCTGGCAATATGCATTGAAAAGAAGAATTTACTCACTCGTGAACATCGTAAAGGTGTTGAAAGCAAAGAGATTGCTGATAATGTTAAGCATGATTCAGAAGAAAGCATAACTAGCTCCAGTACTTCTCAAGGTCAAGGGACCATATCTGGAAATCCTCTATCAAATAATGATAAAAGGAAGGGTTCAGCAGGGGTTGTTCAGTCTATGATGCTTTTGCATTCATATCAGAGTATGCATTCTCCAATCATTCAGGATGCACCACCTCTAACAGAGGATATGCATGAAGAGAGACTCCGAGCAGCTGAAGTTTTTGGAAATTTATTAAGTTTCTCCGGTCAACTGGAAAAGGATATATTGTCCTCGGACATGTCTGCTTTCAAAGCTGCAAACCCTGATGCAGTCTTTGAAGATTTTATTCGCTGGCACTCACCTGGTGATTGGGAGTGTCATGAACCTGAAAATGACTTGATACTCGATATGGCCGAATCCTTGAATCCCAATTGGCCTCCTAAAGGAAGACTTTCTCAGCGCATGGCTGAACATGGAAGCTCGTGGCGGCAAATTTGGAATACTTCTCTAGCAATACCTTCTTCTGAGCAGAGACCTCTTTTGGATCCTATCCGTGAAGGGGAGAAGATTCTTCATTACCTTGAGACCTTAAAACCCCATCAATTGCTTGAGCAAATTGTCTGCACAGCATTCAGAGCATCTGCTGACACTGTGAGTCGGACCAAATTTGGCGAGTTTAAGCTTATGAAAGCTAAAATTGACCAACTCTACCTAACTGTTGCATCGACATTCAAGTCACTGCAAGCAAATCATGTGCCTGATAGGATTGAGCTGATTGGTGATTTGAAGCAACTCTGTGTTATTTTTGAAAATATTGAAAAGTTGGTCATTCTAGCTGCTTCAATTCATCGTAAACTCTCCGAAGCTCCGCGCCTTTCTGAAGCGATTTTTCAAGCCTGCTTTGACTTCTATATGCCAAAAATGGGAACAGGTTCAGAAGGCTTTTGTTATGACAAGGATTTCAGTGTGAAACTAGTTGTAAAAGTGCATGAGAGAGATGTAATTGCAAGCTTCTTTCCTCCCCCCACTGCAAATCAATCATGGAGAAAAGTATTAAGTATGGGCAATCTGTTGTTTGGTCACGAACCAATTTCGAGGGAGATCGTTTTCTCCATCCGTGAAGATGCTGTCGACGGCCATTATGCGTGCGGCGAATTTGCAGCCTCGACGATGGCAAGCGGTTTAGAAACCCACCGCATGTACATCCGCGGGACTTCTAATGATCTGGGCGTCGCGTTATCAGTGACATCTTGGGATTAGCTCGTATTTTTGCTGTTACTTCTAGAGCCCATTATTGTAGTTATATTGACATTGGATTTGGTTGTATTGAGTAGGCTTTTTTATAATTTACATATCTAGCATCTATTCTGATGTTTATCTTTTGATATAAATAATGATATGAGGGTTCTATTTGTGAAAACGAAATTCTGGATCTAAATTATGTAAATGATAGAGATCTTTGTGAAAGAAAATAGCCATTTTGGCCTTTTAATTGTTTTTTTATTTTACTTTAGAGTTCACAATAAGAG

Network for GWHGAAEX009374

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module9

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13890.5	Rab3-GTPase_cat	533	695	1.10E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005096	Molecular Function	GTPase activator activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.360
SRP064423	SRR2545915	Juvenile tuber	29.620
SRP108465	SRR5643513	five period of Gastrodia elata	18.190
	SRR5643514	five period of Gastrodia elata	19.130
	SRR5643515	five period of Gastrodia elata	18.380
	SRR5643524	five period of Gastrodia elata	16.860
	SRR5643525	five period of Gastrodia elata	18.430
	SRR5643528	five period of Gastrodia elata	17.170
	SRR5643658	five period of Gastrodia elata	17.450
	SRR5643659	five period of Gastrodia elata	20.220
	SRR5643660	five period of Gastrodia elata	23.640
	SRR5643661	five period of Gastrodia elata	18.630
	SRR5643662	five period of Gastrodia elata	17.720
	SRR5643663	five period of Gastrodia elata	20.210
	SRR5643664	five period of Gastrodia elata	22.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.750
SRP279888	Gastro	Gastrodia elata tuber	75.09
	Juven	Juvenile tuber	26.06
	Mother_Gastro	Mother tuber of Gastrodia elata	32.53
	Mother_Juven	Mother tuber of Juvenile	27.90