Detail information of GWHGAAEX009379/evm.TU.scaffold_246.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24020Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein)
nrgi|694997496|ref|XP_009399689.1|0PREDICTED: RNA polymerase-associated protein RTF1 homolog [Musa acuminata subsp. malaccensis]
trEMBLtr|M0S0F7|M0S0F7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P16490_001}
TAIRAT1G610400plus-3 domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002423872040696+
Transcript Sequence

Network for GWHGAAEX009379

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03126.17Plus-32723752.40E-29
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms83.290
SRR2545915Juvenile tuber75.470
SRP108465SRR5643513five period of Gastrodia elata48.560
SRR5643514five period of Gastrodia elata42.160
SRR5643515five period of Gastrodia elata48.850
SRR5643524five period of Gastrodia elata47.060
SRR5643525five period of Gastrodia elata34.060
SRR5643528five period of Gastrodia elata42.860
SRR5643658five period of Gastrodia elata34.290
SRR5643659five period of Gastrodia elata50.740
SRR5643660five period of Gastrodia elata53.590
SRR5643661five period of Gastrodia elata52.010
SRR5643662five period of Gastrodia elata50.180
SRR5643663five period of Gastrodia elata51.180
SRR5643664five period of Gastrodia elata51.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.040
SRR6049655Rhizomagastrodiae_C368-T10_good_149.710
SRR6049656Rhizomagastrodiae_C368-T07_good_143.940
SRR6049657Rhizomagastrodiae_C368-T07_good_162.840
SRR6049658Rhizomagastrodiae_C368-T04_good_152.360
SRR6049659Rhizomagastrodiae_C368-T04_good_168.190
SRR6049660Rhizomagastrodiae_C368-T01_good_157.110
SRR6049661Rhizomagastrodiae_C368-T04_good_154.520
SRR6049662Rhizomagastrodiae_C368-T01_good_142.170
SRR6049663Rhizomagastrodiae_C368-T01_good_143.670
SRR6049664Rhizomagastrodiae_C368-T10_good_144.540
SRR6049665Rhizomagastrodiae_C368-T10_good_144.540
SRP279888GastroGastrodia elata tuber 40.93
JuvenJuvenile tuber59.28
Mother_GastroMother tuber of Gastrodia elata 52.21
Mother_JuvenMother tuber of Juvenile 66.51