Detail information of GWHGAAEX009383/evm.TU.scaffold_246.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|258654108|ref|YP_003203264.1| | 9.00E-24 | tRNA delta(2)-isopentenylpyrophosphate transferase [Nakamurella multipartita DSM 44233] |
| KOG | KOG1384 | 2.00E-76 | tRNA delta(2)-isopentenylpyrophosphate transferase |
| nr | gi|695015523|ref|XP_009394636.1| | 2.29E-97 | PREDICTED: adenylate isopentenyltransferase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q94ID3|IPT1_ARATH | 5.00E-77 | Adenylate isopentenyltransferase 1, chloroplastic (Precursor) |
| trEMBL | tr|M0SIW4|M0SIW4_MUSAM | 3.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29480_001} |
| TAIR | AT1G68460 | 2.00E-76 | isopentenyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000242 | 218239 | 219839 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009383
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01715.16 | IPPT | 60 | 133 | 4.90E-15 |
| PF01715.16 | IPPT | 140 | 229 | 9.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10760 | IPT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Zeatin biosynthesis | map00908 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.200 |
| SRR2545915 | Juvenile tuber | 0.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.180 |
| SRR5643514 | five period of Gastrodia elata | 1.140 | |
| SRR5643515 | five period of Gastrodia elata | 0.280 | |
| SRR5643524 | five period of Gastrodia elata | 0.460 | |
| SRR5643525 | five period of Gastrodia elata | 6.820 | |
| SRR5643528 | five period of Gastrodia elata | 2.610 | |
| SRR5643658 | five period of Gastrodia elata | 2.590 | |
| SRR5643659 | five period of Gastrodia elata | 1.660 | |
| SRR5643660 | five period of Gastrodia elata | 2.080 | |
| SRR5643661 | five period of Gastrodia elata | 1.240 | |
| SRR5643662 | five period of Gastrodia elata | 5.200 | |
| SRR5643663 | five period of Gastrodia elata | 4.810 | |
| SRR5643664 | five period of Gastrodia elata | 4.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.37 |
| Juven | Juvenile tuber | 15.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.09 | |
| Mother_Juven | Mother tuber of Juvenile | 1.50 |