Detail information of GWHGAAEX009388/evm.TU.scaffold_246.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779998|ref|YP_008431799.1| | 2.00E-16 | hypothetical protein N186_01990 [Thermofilum sp. 1910b] |
| KOG | KOG1751 | 5.00E-27 | 60s ribosomal protein L23 |
| nr | gi|659127083|ref|XP_008463516.1| | 4.08E-26 | PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo] |
| Swissprot | tr|Q9AT35|RL23A_DAUCA | 5.00E-28 | 60S ribosomal protein L23a |
| trEMBL | tr|B9HC95|B9HC95_POPTR | 2.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:EEE92952.1} |
| TAIR | AT2G39460 | 5.00E-27 | ribosomal protein L23AA |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000242 | 383352 | 394316 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009388
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00276.19 | Ribosomal_L23 | 161 | 222 | 2.80E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02893 | RP-L23Ae, RPL23A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.390 |
| SRR2545915 | Juvenile tuber | 3.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.820 |
| SRR5643514 | five period of Gastrodia elata | 6.760 | |
| SRR5643515 | five period of Gastrodia elata | 4.820 | |
| SRR5643524 | five period of Gastrodia elata | 6.240 | |
| SRR5643525 | five period of Gastrodia elata | 0.650 | |
| SRR5643528 | five period of Gastrodia elata | 0.330 | |
| SRR5643658 | five period of Gastrodia elata | 1.500 | |
| SRR5643659 | five period of Gastrodia elata | 2.940 | |
| SRR5643660 | five period of Gastrodia elata | 2.190 | |
| SRR5643661 | five period of Gastrodia elata | 2.450 | |
| SRR5643662 | five period of Gastrodia elata | 1.320 | |
| SRR5643663 | five period of Gastrodia elata | 1.730 | |
| SRR5643664 | five period of Gastrodia elata | 0.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.27 |
| Juven | Juvenile tuber | 3.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.17 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |