Detail information of GWHGAAEX009389/evm.TU.scaffold_246.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-178 | FOG: PPR repeat |
| nr | gi|743757817|ref|XP_010923753.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9C9A2|PP112_ARATH | 3.00E-178 | Pentatricopeptide repeat-containing protein At1g71060, mitochondrial (Precursor) |
| trEMBL | tr|M0TVB3|M0TVB3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P31610_001} |
| TAIR | AT1G71060 | 9.00E-178 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000242 | 410929 | 413055 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009389
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 179 | 236 | 0.0062 |
| PF01535.19 | PPR | 264 | 292 | 0.005 |
| PF13041.5 | PPR_2 | 295 | 342 | 1.10E-12 |
| PF13041.5 | PPR_2 | 368 | 411 | 2.00E-09 |
| PF01535.19 | PPR | 435 | 464 | 0.0062 |
| PF13041.5 | PPR_2 | 466 | 502 | 5.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.730 |
| SRR2545915 | Juvenile tuber | 4.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.320 |
| SRR5643514 | five period of Gastrodia elata | 7.050 | |
| SRR5643515 | five period of Gastrodia elata | 5.930 | |
| SRR5643524 | five period of Gastrodia elata | 6.140 | |
| SRR5643525 | five period of Gastrodia elata | 12.460 | |
| SRR5643528 | five period of Gastrodia elata | 12.900 | |
| SRR5643658 | five period of Gastrodia elata | 13.370 | |
| SRR5643659 | five period of Gastrodia elata | 5.630 | |
| SRR5643660 | five period of Gastrodia elata | 8.280 | |
| SRR5643661 | five period of Gastrodia elata | 6.340 | |
| SRR5643662 | five period of Gastrodia elata | 8.690 | |
| SRR5643663 | five period of Gastrodia elata | 7.670 | |
| SRR5643664 | five period of Gastrodia elata | 13.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.71 |
| Juven | Juvenile tuber | 5.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.46 | |
| Mother_Juven | Mother tuber of Juvenile | 13.05 |