Detail information of GWHGAAEX009391/evm.TU.scaffold_246.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383765359|ref|YP_005444340.1| | 9.00E-143 | anthranilate synthase component I [Phycisphaera mikurensis NBRC 102666] |
| KOG | KOG1223 | 0 | Isochorismate synthase |
| nr | gi|720053279|ref|XP_010272678.1| | 0 | PREDICTED: anthranilate synthase alpha subunit 1, chloroplastic-like [Nelumbo nucifera] |
| Swissprot | tr|A2XNK3|ASA1_ORYSI | 0 | Anthranilate synthase alpha subunit 1, chloroplastic (Precursor) |
| trEMBL | tr|V4RUD6|V4RUD6_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR38288.1} |
| TAIR | AT2G29690 | 0 | anthranilate synthase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000242 | 481262 | 518420 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009391
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04715.12 | Anth_synt_I_N | 109 | 262 | 2.50E-28 |
| PF00425.17 | Chorismate_bind | 324 | 595 | 5.10E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000162 | Biological Process | tryptophan biosynthetic process |
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0004049 | Molecular Function | anthranilate synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.630 |
| SRR2545915 | Juvenile tuber | 9.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.650 |
| SRR5643514 | five period of Gastrodia elata | 16.880 | |
| SRR5643515 | five period of Gastrodia elata | 12.660 | |
| SRR5643524 | five period of Gastrodia elata | 15.880 | |
| SRR5643525 | five period of Gastrodia elata | 9.970 | |
| SRR5643528 | five period of Gastrodia elata | 12.320 | |
| SRR5643658 | five period of Gastrodia elata | 7.790 | |
| SRR5643659 | five period of Gastrodia elata | 11.180 | |
| SRR5643660 | five period of Gastrodia elata | 9.670 | |
| SRR5643661 | five period of Gastrodia elata | 12.050 | |
| SRR5643662 | five period of Gastrodia elata | 9.850 | |
| SRR5643663 | five period of Gastrodia elata | 9.770 | |
| SRR5643664 | five period of Gastrodia elata | 10.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.85 |
| Juven | Juvenile tuber | 16.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.32 | |
| Mother_Juven | Mother tuber of Juvenile | 12.29 |