Detail information of GWHGAAEX009398/evm.TU.scaffold_247.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030079|ref|YP_003380010.1| | 7.00E-50 | beta-galactosidase [Kribbella flavida DSM 17836] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|695039514|ref|XP_009407297.1| | 0 | PREDICTED: beta-galactosidase 2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8W0A1|BGAL2_ORYSJ | 0 | Beta-galactosidase 2 (Precursor) |
| trEMBL | tr|B7EU06|B7EU06_ORYSJ | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT3G13750 | 0 | beta galactosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000246 | 33413 | 39956 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009398
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 41 | 345 | 5.10E-115 |
| PF02140.17 | Gal_Lectin | 757 | 834 | 2.80E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 102.760 |
| SRR2545915 | Juvenile tuber | 52.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 113.930 |
| SRR5643514 | five period of Gastrodia elata | 75.700 | |
| SRR5643515 | five period of Gastrodia elata | 52.250 | |
| SRR5643524 | five period of Gastrodia elata | 58.780 | |
| SRR5643525 | five period of Gastrodia elata | 58.680 | |
| SRR5643528 | five period of Gastrodia elata | 37.270 | |
| SRR5643658 | five period of Gastrodia elata | 52.860 | |
| SRR5643659 | five period of Gastrodia elata | 37.770 | |
| SRR5643660 | five period of Gastrodia elata | 43.080 | |
| SRR5643661 | five period of Gastrodia elata | 38.360 | |
| SRR5643662 | five period of Gastrodia elata | 51.150 | |
| SRR5643663 | five period of Gastrodia elata | 53.520 | |
| SRR5643664 | five period of Gastrodia elata | 55.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 103.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 109.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 93.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 110.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 104.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 81.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 84.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 93.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 66.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 91.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 91.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.57 |
| Juven | Juvenile tuber | 121.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.95 | |
| Mother_Juven | Mother tuber of Juvenile | 50.12 |