Gene detail

Detail information of GWHGAAEX009407/evm.TU.scaffold_247.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|148658115\|ref\|YP_001278320.1\|	3.00E-35	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
KOG	KOG2127	0	Calmodulin-binding protein CRAG, contains DENN domain
nr	gi\|743755301\|ref\|XP_010943311.1\|	0	PREDICTED: uncharacterized protein LOC105061043 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8RXA7\|SCD1_ARATH	0	DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBL	tr\|M0RX77\|M0RX77_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05190_001}
TAIR	AT1G49040	0	stomatal cytokinesis defective / SCD1 protein (SCD1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000246	278221	432358	-

Transcript Sequence
>GWHTAAEX009407 TAATTATGAAAAAAGTCCTGGTATGATATGGATGCTGAAACCTCATAAAAGCTGCTGCTTCGAAGGTCCTACAAGGGTCGCAGGATCAAATTCTTATATCAAATTTGTTCTGACCCTGAAGTGGAATCGAGCAGCTGATGCGCAGAGGAAGAGGCGGAAAGTAGAAAGACTCAATGGCGTCCCGAATTTTTGAGTACTTTGTCGTTTGCGGTATCGGGCCAGAGGTCCAAGCACTCGATGGTGTTAAGGGTTTTCAAGGAACGGGAATCATGTACATGCCTTCTCTCCTTGATCAGTTTCCTCCAGCAAATCACTCACTCTACCCTCCTCCACCTCCCCAACTCCCAACGTGTGTTCTTCCAGCTGGAATTGAATTCCACTCTTCAGGGTTTGATATGAAGGACATCTCCACATACCCACGCAGCTATCCAATTGTTCTAACTGAGGGTGATGGTTCTAAAATTTTTGTTAGCTGCATTGCATTTCGAGACCCAGTTTGTGAAGATATTACTATTGCATATAGGATACCAACAAGTTATTTTGCTGATAAATGCATATGCCTTGTATCTCGATCACCAAGCTTTCAAGTCCTTAGAGATGTGCTCGAGGAGTTATTCATTCTTTGCTTTTCTTCTAATTCTACAAGGCCGTTATGGGATGTTATAGCTTATTTGGTCTCAAATGTTCCTTTGCCTACACCGGGGAAAGATAGAATCTTTTTTACTGTTGAGGAGCGCCTTTTTTCAGTTGAGACTCCACCAAAGGAAGGACTTCCTCATGCAGACATTTCATTCCAGCCCTTGGTTCAGTGCTTGGACGTTGACAATTTGATTAAACTTTTCACTGCTGTGTTGCTTGAGAGAAGGATACTATTACGATCAAATAAGTATGCACTTCTAACTCTGGTATCGGAGGCAATATGCCATTTAATATATCCTTTTCGGTGGCAACATGTCTACATTCCATTGCTATTTTTTAGCGGGGCTGACTACATTGATGCCCCTACGCCATACATGATGGGTCTTCATTCAGGTGTCGACATTTCCGGGTTAACATTGGATGGTGTAGCTGTGGTTGATCTTGAACATAATTGCATCACGACCTCAGAGGATATCCCCGCAATACCGTACCCTGAATTTAGTTTCTTGCGCAGTGAGATATTAAAGCTGCTGCGTCCCATTGTTGTTGGCATAGACCACATAAAGATCATGCCGTATCAATACGCAAAAACTGGAAGCAGATGTTGGGGAGAAGAGCATGACTTTCAACTTAGGTTAATATTTTTAAAATTTTTTGCACTACTTTTGAGTGGTTACCGTAACTTCATTGAAAACAGCGCTAATAATATCTTTAGTTCTCAAGCATTTTTGAAGAAACGATCCCGTTCCACTAATCAATCTGTTGAGTCGATGGTGATGATTTCACAATTCTTAGATTCTCAAGGATTCTTGGACTATTTGGAGAGATACATCGATTCTGACGAGAACTGCAGCAACCTTCTTAACAAATTGCAAGATGCTACTGGGAGGGGTCAAGATCCCATGACTATTTTCCCCTATGCTGTTGAGCCTGAGATTTTAACTGTATCTCCTCTTAATAAAGCGGCTGCAGGTGAAAAGTGTCATTATGATTGGTTCCCTGCATACATCAGGACTGAGGAGCAGGAGGAAAGGCGCAGATCAATTCTTGCAGTAGCGGTCGGTGCTTTGGACTATTCAGCAAAACAGTCTCCTAGCTCTCCTTCCCTTCTTGGAGTTATTGATTCAAATGATGATAATTTGAGTCCCAGGGAGAGGGCTGCTGAGAGAGAACGTATGGTATTGGATATTCAAGTAAAGCTGCAGGGATTATGGTTGCGTCTTCTTAAACTAGGGGCAACAGAGGACCCTCTTTCATCATTTGAATACGGCACAATTCTTGCTTTGATTGAGTCTGATGCAGAAGGAATAGGGGGGAGCGGATTTGTAGAATGCATCAGGGAACATATTCATTCGGGATGGCAATGTCTATTAACTGATGAACAGTTTATCGCTGTTAAAGAGCTGCTTAAAACTGCAATCAGTCGTGCTACTTTTCGTAATGACTTCGCCACAGTCAGAGATGCCCTTGAAGTATCAGCCGGGATGCACAGAAGAGATACCAATAGCATTCCAGATTTCATTCAACGCCATCTTCTTTCTCTTGCCATATGGGAGGATTTGCGCTTTTGGGATAGCTATTTTGAATACCTGATGGAGCATTCTTCTAATAAGATGACCAATTATGTGACGCTAGTTACTGCACAGCTTGTTGTTTTAGTATCTCACATGATTGGGCTTGGGCTTCCGGATGGTGAATCTTGGAACATGATCGAAGCAATTGCAGTGAAAAATAATATTGGTTACAATCAGCTTATTAAACTCAGAGGCTTTTTGTCACATATTCACCAACTTCGAGTTGGTTATTGGGGAATGTCAGTTTTAAAGTCTCAAGCATCATCTTATGGTTTGCCATCTCCACACCCTCAGGATACCTTTGATGATAGTCAGCAGCAAGCGGAAGCTTCTGGTGTTGGTCGAAGTTGGGTGCAGAGTATGTTTAGCCGAGATAGAAGCATTAGGGCTAATTCTTTTACTCGCGTTCATAAGTGGGCTTCTGATAATGACGCATCAGAGCTCCCTGGTACAGGACAGAAGAAAATTCAGTCAAATGTGCGTATGTTAAGAGGTCATTCAGGTGCAGTTACTGCTTTGCATTGTGTTACAAGAAGGGAGGTGTGGGATCTTGTAGGTGACCGTGACGATGCGGGCTTCTTCATCAGTGGAAGTATTGATTGCACGGTTAAAATATGGGATCCTACTTTGCGCGGTTCTGAACTTCGTGCCACATTGAAGGGGCATACTAGATCAGTTCGTGCAATCAATTCTGATAGATGCAAAGTGGTATCAGGTTCAGATGACCATTCAGTCATTGTCTGGGATAAACAAACTTGTCAGCTTCTTGAAGAGTTGAAAGGCCATGATTCATCGGTGAGCTGTGTACGGATGCTTCCTGGTGAAAGGGTTCTTACCGCAGCTCATGATGGTGCTGTGAAAATGTGGGATGTGAGAACTGATACCTGTGTTGCTACTGTTGGTCGCTGTTCTAGTGCTGTCCTTTGCATGGAATATGATGATTCCACCGGAATTCTTGCAGCTGCTGGGCGAGATGTGGCGGCAAATATTTGGGACATTCGTGCTGGTAAACAGATGCAGAAGCTTCTAGGTCATAATAAATGGATTCGTTCTATAAGGATGTTTGGGGACATCTTACTTACTGGAAGTGATGATTGGACGGCTAGAGTGTGGTCTGTTTCCAGAGGAACATGCGATGCTGTCTTAGCATGTCATGCTGGCTCTATACTTTGCGTTGAATACTCTCCATCAGATAAAGGGATAATAACCGGTTCAGCTGATGGGCTCGTAAAGTTTTGGGAAAATGAAGAAGGAGTACGATGCTTGAAGAATGTAACAGCTCACTCCGGCTCCATTCTATCCGTGAATGCCGGAGAACACTGGCTTGGGATTGGGGCTGCTGATAATTCTATGTCTCTTTTCCATCGGCCTCAGGAAAGACTCGGCGGTTTCTCCGCCCCCGGCTCAAAAGCACCTGGATGGCAATTATACAGAACACCGCAGAAGTCTGTCGCCGTGGTTCGCTGTGTGGCATCAGACCTTGATAGAAAGAGGATATGCAGTGGTGGACGAAACGGAATTCTTCGGCTGTGGGATGCCACAATCAATATATAGATGTTGCAGCAATATGTATGGTTGCGACCCAAAATTACATTGATTCATGAGCCCCATATGTGATTGATACATTTACAATATATTATGGTTTCTCTTTTTTTTTAAAAAATGAAGTATTGATTGTATTGCCATTCACACACCTGAAGTTTATGAGTCTCATATCTATTAGTAGTTAAAGACTGAAATAGATGAATGGTTGCATTTTTCATATTATAATTATATACTTTGTGGGTTA

Network for GWHGAAEX009407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03456.17	uDENN	36	104	9.80E-11
PF02141.20	DENN	125	305	9.10E-47
PF00400.31	WD40	838	887	0.00066
PF00400.31	WD40	897	929	0.0015
PF00400.31	WD40	934	970	0.00024
PF00400.31	WD40	1017	1052	0.02
PF00400.31	WD40	1057	1093	0.00081
PF00400.31	WD40	1163	1192	0.25

Protein Sequence

>GWHPAAEX009407
MASRIFEYFVVCGIGPEVQALDGVKGFQGTGIMYMPSLLDQFPPANHSLYPPPPPQLPTCVLPAGIEFHSSGFDMKDISTYPRSYPIVLTEGDGSKIFVSCIAFRDPVCEDITIAYRIPTSYFADKCICLVSRSPSFQVLRDVLEELFILCFSSNSTRPLWDVIAYLVSNVPLPTPGKDRIFFTVEERLFSVETPPKEGLPHADISFQPLVQCLDVDNLIKLFTAVLLERRILLRSNKYALLTLVSEAICHLIYPFRWQHVYIPLLFFSGADYIDAPTPYMMGLHSGVDISGLTLDGVAVVDLEHNCITTSEDIPAIPYPEFSFLRSEILKLLRPIVVGIDHIKIMPYQYAKTGSRCWGEEHDFQLRLIFLKFFALLLSGYRNFIENSANNIFSSQAFLKKRSRSTNQSVESMVMISQFLDSQGFLDYLERYIDSDENCSNLLNKLQDATGRGQDPMTIFPYAVEPEILTVSPLNKAAAGEKCHYDWFPAYIRTEEQEERRRSILAVAVGALDYSAKQSPSSPSLLGVIDSNDDNLSPRERAAERERMVLDIQVKLQGLWLRLLKLGATEDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCLLTDEQFIAVKELLKTAISRATFRNDFATVRDALEVSAGMHRRDTNSIPDFIQRHLLSLAIWEDLRFWDSYFEYLMEHSSNKMTNYVTLVTAQLVVLVSHMIGLGLPDGESWNMIEAIAVKNNIGYNQLIKLRGFLSHIHQLRVGYWGMSVLKSQASSYGLPSPHPQDTFDDSQQQAEASGVGRSWVQSMFSRDRSIRANSFTRVHKWASDNDASELPGTGQKKIQSNVRMLRGHSGAVTALHCVTRREVWDLVGDRDDAGFFISGSIDCTVKIWDPTLRGSELRATLKGHTRSVRAINSDRCKVVSGSDDHSVIVWDKQTCQLLEELKGHDSSVSCVRMLPGERVLTAAHDGAVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAAGRDVAANIWDIRAGKQMQKLLGHNKWIRSIRMFGDILLTGSDDWTARVWSVSRGTCDAVLACHAGSILCVEYSPSDKGIITGSADGLVKFWENEEGVRCLKNVTAHSGSILSVNAGEHWLGIGAADNSMSLFHRPQERLGGFSAPGSKAPGWQLYRTPQKSVAVVRCVASDLDRKRICSGGRNGILRLWDATINI

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	94.700
SRP064423	SRR2545915	Juvenile tuber	66.940
SRP108465	SRR5643513	five period of Gastrodia elata	45.140
	SRR5643514	five period of Gastrodia elata	40.950
	SRR5643515	five period of Gastrodia elata	40.090
	SRR5643524	five period of Gastrodia elata	39.940
	SRR5643525	five period of Gastrodia elata	62.140
	SRR5643528	five period of Gastrodia elata	45.870
	SRR5643658	five period of Gastrodia elata	64.850
	SRR5643659	five period of Gastrodia elata	48.030
	SRR5643660	five period of Gastrodia elata	56.210
	SRR5643661	five period of Gastrodia elata	51.350
	SRR5643662	five period of Gastrodia elata	60.560
	SRR5643663	five period of Gastrodia elata	62.290
	SRR5643664	five period of Gastrodia elata	69.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.670
SRP279888	Gastro	Gastrodia elata tuber	38.50
	Juven	Juvenile tuber	45.96
	Mother_Gastro	Mother tuber of Gastrodia elata	27.69
	Mother_Juven	Mother tuber of Juvenile	33.69