Gene detail

Detail information of GWHGAAEX009411/evm.TU.scaffold_249.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332661895\|ref\|YP_004451364.1\|	7.00E-39	WD40 repeat-containing protein [Haliscomenobacter hydrossis DSM 1100]
KOG	KOG0286	0	G-protein beta subunit
nr	gi\|695038480\|ref\|XP_009406753.1\|	0	PREDICTED: guanine nucleotide-binding protein subunit beta [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P93563\|GBB_SOLTU	0	Guanine nucleotide-binding protein subunit beta
trEMBL	tr\|M0TBW1\|M0TBW1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P31660_001}
TAIR	AT4G34460	0	GTP binding protein beta 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000251	114878	157314	-

Transcript Sequence
>GWHTAAEX009411 GTCAAATTTGGGTTATCTCTCGCTTTCCTGGCTTGCCTCTAGCCTAAATCGCATCCTTTCCCTACCGCTTCCTTCTGGGATTCAGTCCATTTTCCAGATTTGCTGCAATGGGATGGAGGATTTAAATCTAGCATATCATAGAAGTTGCTTTAAGGATGGCAGGAGGCTACTGAAACTCCGCAGGTGGTTCAGGTTTAAGGCTGCTGTTTGTAAATGTCGGTTGCGGAGCTGAAAGAGCGGCACGTTGCGGCGACGGCTGCAGTGAATGTGCTGCGAGAACGGTTGAAACAGAGGAGGCAGCTTCTGCTCGATACCGATGTGGCGACCTTCGCGAGAAACCGTGGAAAGGCGACGGTTAGCTTCAGTCCTACTGACCTGGTTTGCTGCAGGACCTTGCAGGGTCACACAGGGAAGGTTTATTCTTTAGACTGGACCCAGGAAAGGAACCGAATTGTTAGTGCATCTCAGGATGGGAGGTTTATAGTATGGAATGCTTTGACAAGTCAAAAAACACATGCAACGAAGCTTCCTTGTGCTTATGTTATGACATGTGCCTTTTCTCCCAATGGCCAGTCTGTTGCTTGTGGTGGCCTTGATAGCGCATGCTCTATATTTAATCTTAATTCTCAAGTTGATAGGGATGGAAACATCCCCGCATCAAGAGTACTAACTGGTCACAAGGGATATGTATCATGTTGTCACTACATTCCTGATCAAGAATCTCGCCTGATCACTAGCTCAGGTGACCAGACTTGTGGTCTGTGGGATGTTACTACTGGCCAGAGAATTTCTGCTTTTGGAGGTGAATTTCCTTCTGGTCACACATCTGATATTTTAAGTGTCTCAGTGAACACTTCCAATTCAAATATGTTTGTTTCTGGTTCTTGTGATGAAACTGCTAGACTGTGGGATACCAGAATTGCTAGCCGGGCAGTGCGAACATACTATGGTCATACTGGGGATGTTAATACAGTCAAGTTTTTCCCAGATGGGCAACGGTTTGGCACTGGCTCTGATGATGGCTCATGTAGGCTGTTTGACATGCGGACAGGGCATCAACTTCAAATTTATAGTCAGCAACACGGTGAAAATGATGACGTCCCTTCTGTCAAGGCGCTTACTTTCTCAATATCAGGAAGACTACTCTTTGCTGGATACTCTAATGGCGATTGTTTTGTTTGGGATACGCTAATGGCTGAGGTTGTTCTTAACTTGGGTTCTCTGCAAAACTCACACGAGGGTACTATAAGTTGCTTAGGTTTGTCTTCGGATGGTAGTGCCTTCTGCACAGGAAGCTATGACAAAAAACTTAAGATTTGGGCCTTTGGAGGACACAGAGAGGTGATGTGATCTCTTATGGGCTGGTGATTTGCGACTGTGTACTGAAGATATTCTTTAATGTGGGGTTATTCAGATTTGTGCCAAATATGCTTACATTAGTCTCTTCTGCTGTTTTCCTTGGTTATTATTCTAATTTCTCGTGTTTGTATGTTTGTGCAGTTGTATGTGTACAAATTGTATTCACACTTTTCAGTTTTAGAAGAATATTTTAATTTTTCTGAATCACATTTTCTATTTTTTTTTTCTAGTTTGATAAGTTTTACTTTTACTTAAAAGCCATATACATTTATATCTA

Network for GWHGAAEX009411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	57	93	0.00029
PF00400.31	WD40	104	135	0.15
PF00400.31	WD40	150	185	0.0028
PF00400.31	WD40	201	233	0.003
PF00400.31	WD40	241	276	1.70E-06
PF00400.31	WD40	283	324	0.16
PF00400.31	WD40	340	369	0.0051

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K04536	GNB1	Ras signaling pathway	map04014
		MAPK signaling pathway - yeast	map04011
		Apelin signaling pathway	map04371
		PI3K-Akt signaling pathway	map04151
		Chemokine signaling pathway	map04062
		Relaxin signaling pathway	map04926
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727
		Cholinergic synapse	map04725
		Dopaminergic synapse	map04728
		Serotonergic synapse	map04726
		Retrograde endocannabinoid signaling	map04723
		Phototransduction	map04744
		Olfactory transduction	map04740
		Circadian entrainment	map04713

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.360
SRP064423	SRR2545915	Juvenile tuber	44.680
SRP108465	SRR5643513	five period of Gastrodia elata	38.140
	SRR5643514	five period of Gastrodia elata	33.850
	SRR5643515	five period of Gastrodia elata	34.450
	SRR5643524	five period of Gastrodia elata	35.340
	SRR5643525	five period of Gastrodia elata	46.020
	SRR5643528	five period of Gastrodia elata	46.030
	SRR5643658	five period of Gastrodia elata	49.890
	SRR5643659	five period of Gastrodia elata	33.840
	SRR5643660	five period of Gastrodia elata	30.520
	SRR5643661	five period of Gastrodia elata	31.720
	SRR5643662	five period of Gastrodia elata	28.420
	SRR5643663	five period of Gastrodia elata	30.630
	SRR5643664	five period of Gastrodia elata	29.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.870
SRP279888	Gastro	Gastrodia elata tuber	33.48
	Juven	Juvenile tuber	43.19
	Mother_Gastro	Mother tuber of Gastrodia elata	39.79
	Mother_Juven	Mother tuber of Juvenile	35.87