Detail information of GWHGAAEX009419/evm.TU.scaffold_249.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743871417|ref|XP_010906297.1|1.82E-25PREDICTED: uncharacterized protein LOC105033266 [Elaeis guineensis]
trEMBLtr|A0A068U1P4|A0A068U1P4_COFCA7.00E-25Coffea canephora
TAIRAT5G668602.00E-20Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000251394914395324+
Transcript Sequence

Network for GWHGAAEX009419

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01386.18Ribosomal_L25p271162.70E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02897RP-L25, rplY Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0008097Molecular Function5S rRNA binding
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.660
SRR2545915Juvenile tuber4.790
SRP108465SRR5643513five period of Gastrodia elata21.170
SRR5643514five period of Gastrodia elata15.410
SRR5643515five period of Gastrodia elata18.250
SRR5643524five period of Gastrodia elata16.010
SRR5643525five period of Gastrodia elata21.790
SRR5643528five period of Gastrodia elata16.390
SRR5643658five period of Gastrodia elata19.040
SRR5643659five period of Gastrodia elata15.380
SRR5643660five period of Gastrodia elata29.080
SRR5643661five period of Gastrodia elata24.520
SRR5643662five period of Gastrodia elata29.300
SRR5643663five period of Gastrodia elata25.650
SRR5643664five period of Gastrodia elata23.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.380
SRR6049655Rhizomagastrodiae_C368-T10_good_117.860
SRR6049656Rhizomagastrodiae_C368-T07_good_121.870
SRR6049657Rhizomagastrodiae_C368-T07_good_123.340
SRR6049658Rhizomagastrodiae_C368-T04_good_120.980
SRR6049659Rhizomagastrodiae_C368-T04_good_126.900
SRR6049660Rhizomagastrodiae_C368-T01_good_121.150
SRR6049661Rhizomagastrodiae_C368-T04_good_121.660
SRR6049662Rhizomagastrodiae_C368-T01_good_127.250
SRR6049663Rhizomagastrodiae_C368-T01_good_120.420
SRR6049664Rhizomagastrodiae_C368-T10_good_127.650
SRR6049665Rhizomagastrodiae_C368-T10_good_127.650
SRP279888GastroGastrodia elata tuber 35.83
JuvenJuvenile tuber34.16
Mother_GastroMother tuber of Gastrodia elata 55.22
Mother_JuvenMother tuber of Juvenile 39.96