Detail information of GWHGAAEX009420/evm.TU.scaffold_249.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|85373995|ref|YP_458057.1|5.00E-1150S ribosomal protein L25/general stress protein Ctc [Erythrobacter litoralis HTCC2594]
nrgi|672137900|ref|XP_008792687.1|5.96E-45PREDICTED: uncharacterized protein LOC103709224 [Phoenix dactylifera]
trEMBLtr|W1PJG6|W1PJG6_AMBTC4.00E-41Uncharacterized protein {ECO:0000313|EMBL:ERN10132.1}
TAIRAT5G668604.00E-34Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000251395390402404+
Transcript Sequence

Network for GWHGAAEX009420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14693.5Ribosomal_TL5_C11903.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02897RP-L25, rplY Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.230
SRR2545915Juvenile tuber11.300
SRP108465SRR5643513five period of Gastrodia elata30.930
SRR5643514five period of Gastrodia elata18.860
SRR5643515five period of Gastrodia elata20.960
SRR5643524five period of Gastrodia elata21.520
SRR5643525five period of Gastrodia elata43.720
SRR5643528five period of Gastrodia elata17.060
SRR5643658five period of Gastrodia elata18.460
SRR5643659five period of Gastrodia elata22.690
SRR5643660five period of Gastrodia elata36.530
SRR5643661five period of Gastrodia elata32.840
SRR5643662five period of Gastrodia elata35.020
SRR5643663five period of Gastrodia elata26.360
SRR5643664five period of Gastrodia elata25.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.950
SRR6049655Rhizomagastrodiae_C368-T10_good_138.960
SRR6049656Rhizomagastrodiae_C368-T07_good_136.080
SRR6049657Rhizomagastrodiae_C368-T07_good_117.750
SRR6049658Rhizomagastrodiae_C368-T04_good_118.770
SRR6049659Rhizomagastrodiae_C368-T04_good_116.970
SRR6049660Rhizomagastrodiae_C368-T01_good_119.040
SRR6049661Rhizomagastrodiae_C368-T04_good_116.100
SRR6049662Rhizomagastrodiae_C368-T01_good_112.160
SRR6049663Rhizomagastrodiae_C368-T01_good_119.030
SRR6049664Rhizomagastrodiae_C368-T10_good_124.540
SRR6049665Rhizomagastrodiae_C368-T10_good_124.540
SRP279888GastroGastrodia elata tuber 35.80
JuvenJuvenile tuber29.97
Mother_GastroMother tuber of Gastrodia elata 48.20
Mother_JuvenMother tuber of Juvenile 28.45