Detail information of GWHGAAEX009421/evm.TU.scaffold_249.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0021 | 0 | Glutathione synthetase |
| nr | gi|672183441|ref|XP_008811999.1| | 0 | PREDICTED: glutathione synthetase, chloroplastic-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O22494|GSHB_SOLLC | 0 | Glutathione synthetase, chloroplastic (Precursor) |
| trEMBL | tr|M0RTI3|M0RTI3_MUSAM | 0 | Glutathione synthetase {ECO:0000256|PIRNR:PIRNR001558} |
| TAIR | AT5G27380 | 0 | glutathione synthetase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000251 | 439530 | 471031 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009421
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03917.16 | GSH_synth_ATP | 30 | 473 | 1.60E-133 |
| PF03199.14 | GSH_synthase | 223 | 306 | 1.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K21456 | GSS | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Glutathione metabolism | map00480 | ||
| Ferroptosis | map04216 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006750 | Biological Process | glutathione biosynthetic process |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004363 | Molecular Function | glutathione synthase activity |
| GO:0016874 | Molecular Function | ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.770 |
| SRR2545915 | Juvenile tuber | 20.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.510 |
| SRR5643514 | five period of Gastrodia elata | 20.020 | |
| SRR5643515 | five period of Gastrodia elata | 18.070 | |
| SRR5643524 | five period of Gastrodia elata | 21.280 | |
| SRR5643525 | five period of Gastrodia elata | 21.180 | |
| SRR5643528 | five period of Gastrodia elata | 22.750 | |
| SRR5643658 | five period of Gastrodia elata | 17.750 | |
| SRR5643659 | five period of Gastrodia elata | 10.810 | |
| SRR5643660 | five period of Gastrodia elata | 12.810 | |
| SRR5643661 | five period of Gastrodia elata | 9.660 | |
| SRR5643662 | five period of Gastrodia elata | 16.120 | |
| SRR5643663 | five period of Gastrodia elata | 13.180 | |
| SRR5643664 | five period of Gastrodia elata | 15.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.25 |
| Juven | Juvenile tuber | 25.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.80 | |
| Mother_Juven | Mother tuber of Juvenile | 23.21 |