Detail information of GWHGAAEX009423/evm.TU.scaffold_249.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|22297653|ref|NP_680900.1|8.00E-4130S ribosomal protein S9 [Thermosynechococcus elongatus BP-1]
KOGKOG16971.00E-84Mitochondrial/chloroplast ribosomal protein S9
nrgi|48428519|sp|P82278.1|RR9_SPIOL2.77E-94RecName: Full=30S ribosomal protein S9, chloroplastic; Flags: Precursor, partial [Spinacia oleracea]
Swissprottr|P82278|RR9_SPIOL1.00E-9630S ribosomal protein S9, chloroplastic (Precursor; Fragment)
trEMBLtr|M0S8R0|M0S8R0_MUSAM1.00E-87Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P17190_001}
TAIRAT1G749701.00E-84ribosomal protein S9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000251508305528313+
Transcript Sequence

Network for GWHGAAEX009423

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00380.18Ribosomal_S9922133.30E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02996RP-S9, MRPS9, rpsI Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.040
SRR2545915Juvenile tuber38.810
SRP108465SRR5643513five period of Gastrodia elata28.440
SRR5643514five period of Gastrodia elata31.250
SRR5643515five period of Gastrodia elata29.780
SRR5643524five period of Gastrodia elata27.050
SRR5643525five period of Gastrodia elata37.020
SRR5643528five period of Gastrodia elata26.280
SRR5643658five period of Gastrodia elata34.040
SRR5643659five period of Gastrodia elata35.730
SRR5643660five period of Gastrodia elata36.400
SRR5643661five period of Gastrodia elata40.170
SRR5643662five period of Gastrodia elata67.950
SRR5643663five period of Gastrodia elata52.970
SRR5643664five period of Gastrodia elata59.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.100
SRR6049655Rhizomagastrodiae_C368-T10_good_144.530
SRR6049656Rhizomagastrodiae_C368-T07_good_136.480
SRR6049657Rhizomagastrodiae_C368-T07_good_134.090
SRR6049658Rhizomagastrodiae_C368-T04_good_126.490
SRR6049659Rhizomagastrodiae_C368-T04_good_127.130
SRR6049660Rhizomagastrodiae_C368-T01_good_125.030
SRR6049661Rhizomagastrodiae_C368-T04_good_129.250
SRR6049662Rhizomagastrodiae_C368-T01_good_128.660
SRR6049663Rhizomagastrodiae_C368-T01_good_121.690
SRR6049664Rhizomagastrodiae_C368-T10_good_134.270
SRR6049665Rhizomagastrodiae_C368-T10_good_134.270
SRP279888GastroGastrodia elata tuber 55.87
JuvenJuvenile tuber33.03
Mother_GastroMother tuber of Gastrodia elata 18.95
Mother_JuvenMother tuber of Juvenile 24.73