Gene detail

Detail information of GWHGAAEX009425/evm.TU.scaffold_249.21

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|743759798\|ref\|XP_010933859.1\|	PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8GYP6\|PPR49_ARATH	Pentatricopeptide repeat-containing protein At1g18900
trEMBL	tr\|I1IG18\|I1IG18_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G00490.1}
TAIR	AT1G18900	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000251	593382	606956	+

Transcript Sequence
>GWHTAAEX009425 CTCGTTTGCTTGTTCTCACTTTTTGAGGAGGGATAAACATAAAAGATGACATCTTTTACTCTGTTGCGCTTCTCAGGAAATTAGGGGCGGTATTTTGCTTGAGCTCTTCAGGATGAAACGAGTCAGCTTTTGCGACTGCATTACAGGCCTCCACTAAAATGCATATCTGAACATCAATTAATTTACTTAAGATGTTGAGGGCAAAGCAGATTAGCCAACTTTCCCAGTGTGCAAGGCCCTTCTATCTAAGTGGTTCTAGATGTAGCACAGCTGATGGAGCCTCATGTTCTACTTCAGATGATGATAAGCATGCTTCAAGAAGTCAGTCAAGAAGCTCAGATGTCCTACAAAAACAGCAGAATTCTCAAGTCCTACCTTTGCCTGCAGCTGACACTGGTTCTTCAGGCCTCAGGACTGCCATTGGATCTACTATTCAATTAGCTTCGAAGGCTTCCTCCTGCTCGCCATCATTTCCTCAAGTCTGCACATCAATCTCATCAATAAAGTCAGATTCAGCTGCTGTAAATGGACAGGCTAAGGTTACTAACAAAGGCTTGCCACTCCCACCTAAAGCCTCAGATAATCACTTTTATAACAAAAGCTTGCCACTCCCATCTAAATCCACAGATGATGACCTCATCAAGACTGGTACTCCAGGTGTCACAAAGGCTGTAAGCTGTAATACCACGCCAGCAGCTAATAAACATTTTCTTCCTGATCCTAAGTGCTCCAAAGCCCACTCTAAGTCACCAGCAAGTCTTTCAAAATCTTCCTATGAGAAGCCTCGATGTCGAGTTAAGTCTGCTGAGGTTCTGATAAACTCTTCTATAAGCACAAACGGAGAAAAGAAGCCTTGTACAATGCAAGCTAAGCCGAACAACCATTTGACCCCCATGAAAACTAGGAGGGCACAACCAAGGATCCTAAACACACATGGCCAAATACACTGTGAAACATTCCATCCAGAAGGCATTTTTTCGGCCGTAAAATCTGCTGGTACAATCCCTGGGGAAGATGGCGCAGTTTCTGCTGCTGATTATCTTGGGTCTGCTCATACTTTCTTCCAATCTTTGAAACCTTCAAGGTTCCAGTCTGTGGGTTTACCCATGAACTCTTTACTTGCTGCTGAAAGCTATTATCATGTGTTGCAGCAGCAGAAGTGGGATCCTACTGCAGAAGAACGTCTGAATAAACTTGAACACAAACTAGATGCTTTTCAAGCAAACCAAGTTCTAAAACTGTTGCACGAACATTCAGTTGCTTTTGGGTTTTTTAGATGGCTTAAAAGACAGCCTGGATTCAAGCATGATGAGTACACGTATACCACCATGATAGGCATCCTCGGCCAAGCAAGGCAATTCAATGCCATGATAGAACTTCTACGAGAAATGAAGAAAGATGGTTGCTTGCCAACTATTGTCACTTATAATCGTATGATTCATTCATATGGTCGTGCTAACTTCATTGGAGAGGCTATTAAAGTTTTCTATGAGATGCAGGAACTCGGATATGTGCCTGACCTTGTCACATTCTGCACTCTCATTGATATTCATGCTAAAGCTGGCTTTCTTGATGTTTCGCTCAACCTTTATCAGAGGATGCGGGCGGACGGTCTTTCACCTGACACTTTTACATATAGTGTGATGGTGAACTGTCTTGGCAAAGCTGGCCAACTTGCTGCTGCTCAGAAGATGTATGCTGAGATGATCGAAAACGGTTGTATTCCTAATATTGTGACATACAATATCATGATTGCGCTGCAAGCTAAGGCAAGGAATTATCCTGTTGCTGTGAAACTCTACCATGACATGCGGGCTGCTGGATTTCGGCCAGATCTGGTGACTTGTAACATTGTAATGGAAGCTCTTGGGCATTGCGGCCATATTGAGGAAGCAGAAGTTGTGTTTAATGAGATGAGGAAAGTTTGCGTTCCGGATGAACCGGTTTACGGCCTTTTGATTGATTTGTGGGGTAAGGCTGGAAGCATTGAGAGAGCTCAAGCGTGGTACTGTGCAATGCTGGAGGAAGGGTTGAAGCCAAACACTCCTACATGTAACTCCTTACTGAGTGCGTATCTTAGAGCACACCGTTTCTCTGAGGCTCGTGACATCCTTCTAAATATGCTCTCGATTGGATTAGTGCCATCCTTACAAACTTATACCATTCTTCTCAGCTTCTGCACAGTGCCAACCTCTCAGAATGCATTGTGCTGTGAGTTAATGGCCATAACTGACCATCCAGCTCACTATTTCCTTCTATCGATGCCATTTGCTAAGCCGAGTGGGCAGAATGTTAGGGATCATACTAGCCATTTCTTTGATATGATGCACAGCGAGGATCGGGAAAGTAAGCGAGGCCTTGCTGATGCTGTTGTAGATTTTCTTCACAAGTCTGGTCTCAAGGAGGAAGCTGGATTAGTGTGGGAGGTTGCATCACAGAGAAATGTCTTCCCTGAGTTATTAAGGGAGAGGAGCAAATCCCATTGGCATATTAATCTCCATGTTATGTCTGACGGGACGGCACTGACTGCATTGGCAAGAACATTGGCTTGGTTTCGGCGGCGGATTCTTAATACAGGCAGTAGGATGTGGAGGATTGATATTATAACTGGATGGGGCAGGCGAAGCAGGGTTACAGGCTCTTCTTTGGTTAGGCAGGTTGTGGAGGATCTGCTTCACCTCTTTCAATTCCCATTTGCTTCCAGTAGCAATTCTGGATGCTTTGTGGGTTGTGGGGAACCTCTCAATCGATGGCTCTTAAACTCTTATGTGGAGAGAATGCATTTGTTGTAGTGTTTAGTAGGTTCATCTAATCATCTGTCACTTTGGATGATTATTCTAAAAGCAGTTTTAGCATGTAGAACTGTAGGGTGTTGTTATCATCTCAAGAGAAAAATGCGATTGTTTTGGTTCATTATCATATATATCAGGGTATTAAATGAACTATGACAGAATGAAGAATCAAAGCGTTTTTGTTTGTTATTCATGATGTTTCAGGTTTTCTTATGGCTGTTTGCTTACAAATTTAGATGGCAGCTTATTTTTGTTGAATCATACGGCTATGCTTGTATTAAATATATATAGAAGAAGATATCACATAATAGTTTTGTTGATTAAGGCTGTTTTATGTGGTATTTTGTGTAAAC

Network for GWHGAAEX009425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	375	405	1.20E-05
PF13041.5	PPR_2	407	454	1.60E-11
PF12854.6	PPR_1	473	505	5.10E-07
PF13041.5	PPR_2	512	559	5.30E-12
PF01535.19	PPR	585	614	0.14
PF13041.5	PPR_2	616	663	9.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.560
SRP064423	SRR2545915	Juvenile tuber	22.130
SRP108465	SRR5643513	five period of Gastrodia elata	15.070
	SRR5643514	five period of Gastrodia elata	12.300
	SRR5643515	five period of Gastrodia elata	11.020
	SRR5643524	five period of Gastrodia elata	10.350
	SRR5643525	five period of Gastrodia elata	10.810
	SRR5643528	five period of Gastrodia elata	8.500
	SRR5643658	five period of Gastrodia elata	10.320
	SRR5643659	five period of Gastrodia elata	14.500
	SRR5643660	five period of Gastrodia elata	15.280
	SRR5643661	five period of Gastrodia elata	14.410
	SRR5643662	five period of Gastrodia elata	17.010
	SRR5643663	five period of Gastrodia elata	15.280
	SRR5643664	five period of Gastrodia elata	18.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.400
SRP279888	Gastro	Gastrodia elata tuber	21.12
	Juven	Juvenile tuber	15.63
	Mother_Gastro	Mother tuber of Gastrodia elata	19.77
	Mother_Juven	Mother tuber of Juvenile	7.25