Detail information of GWHGAAEX009429/evm.TU.scaffold_25.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|511059861|ref|YP_008071746.1|2.00E-155glycyl-tRNA ligase [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
KOGKOG22980Glycyl-tRNA synthetase and related class II tRNA synthetase
nrgi|743806750|ref|XP_010927793.1|0PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Elaeis guineensis]
Swissprottr|O23627|SYGM1_ARATH0Glycine--tRNA ligase 1, mitochondrial (Precursor)
trEMBLtr|M0U560|M0U560_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP00480_001}
TAIRAT1G298800glycyl-tRNA synthetase / glycine--tRNA ligase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000302311340173-
Transcript Sequence

Network for GWHGAAEX009429

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00458.19WHEP-TRS60997.50E-07
PF00587.24tRNA-synt_2b2965231.00E-09
PF03129.19HGTP_anticodon6217086.10E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01880GARS, glyS1 Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006426Biological Processglycyl-tRNA aminoacylation
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0005524Molecular FunctionATP binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0004820Molecular Functionglycine-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.450
SRR2545915Juvenile tuber40.470
SRP108465SRR5643513five period of Gastrodia elata56.840
SRR5643514five period of Gastrodia elata60.710
SRR5643515five period of Gastrodia elata51.600
SRR5643524five period of Gastrodia elata59.940
SRR5643525five period of Gastrodia elata54.480
SRR5643528five period of Gastrodia elata54.890
SRR5643658five period of Gastrodia elata58.330
SRR5643659five period of Gastrodia elata68.960
SRR5643660five period of Gastrodia elata66.450
SRR5643661five period of Gastrodia elata71.670
SRR5643662five period of Gastrodia elata71.080
SRR5643663five period of Gastrodia elata74.540
SRR5643664five period of Gastrodia elata66.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.340
SRR6049655Rhizomagastrodiae_C368-T10_good_157.840
SRR6049656Rhizomagastrodiae_C368-T07_good_160.620
SRR6049657Rhizomagastrodiae_C368-T07_good_151.100
SRR6049658Rhizomagastrodiae_C368-T04_good_148.690
SRR6049659Rhizomagastrodiae_C368-T04_good_144.100
SRR6049660Rhizomagastrodiae_C368-T01_good_152.480
SRR6049661Rhizomagastrodiae_C368-T04_good_148.150
SRR6049662Rhizomagastrodiae_C368-T01_good_174.200
SRR6049663Rhizomagastrodiae_C368-T01_good_165.470
SRR6049664Rhizomagastrodiae_C368-T10_good_172.800
SRR6049665Rhizomagastrodiae_C368-T10_good_172.800
SRP279888GastroGastrodia elata tuber 51.61
JuvenJuvenile tuber61.90
Mother_GastroMother tuber of Gastrodia elata 40.16
Mother_JuvenMother tuber of Juvenile 54.23