Detail information of GWHGAAEX009430/evm.TU.scaffold_25.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-43FOG: Predicted E3 ubiquitin ligase
nrgi|743877691|ref|XP_010907966.1|2.68E-99PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Elaeis guineensis]
Swissprottr|Q8LE94|RING3_ARATH3.00E-39E3 ubiquitin-protein ligase At3g02290
trEMBLtr|A0A061E5G8|A0A061E5G8_THECC7.00E-83RING/U-box superfamily protein isoform 1 {ECO:0000313|EMBL:EOX99591.1}
TAIRAT5G157902.00E-43RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003099058122565-
Transcript Sequence

Network for GWHGAAEX009430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12678.6zf-rbx11592045.20E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.830
SRR2545915Juvenile tuber26.050
SRP108465SRR5643513five period of Gastrodia elata31.490
SRR5643514five period of Gastrodia elata28.320
SRR5643515five period of Gastrodia elata31.880
SRR5643524five period of Gastrodia elata30.260
SRR5643525five period of Gastrodia elata33.530
SRR5643528five period of Gastrodia elata24.410
SRR5643658five period of Gastrodia elata29.100
SRR5643659five period of Gastrodia elata17.940
SRR5643660five period of Gastrodia elata18.090
SRR5643661five period of Gastrodia elata17.270
SRR5643662five period of Gastrodia elata18.020
SRR5643663five period of Gastrodia elata19.660
SRR5643664five period of Gastrodia elata20.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.860
SRR6049655Rhizomagastrodiae_C368-T10_good_119.120
SRR6049656Rhizomagastrodiae_C368-T07_good_117.620
SRR6049657Rhizomagastrodiae_C368-T07_good_117.680
SRR6049658Rhizomagastrodiae_C368-T04_good_117.070
SRR6049659Rhizomagastrodiae_C368-T04_good_120.190
SRR6049660Rhizomagastrodiae_C368-T01_good_118.400
SRR6049661Rhizomagastrodiae_C368-T04_good_118.570
SRR6049662Rhizomagastrodiae_C368-T01_good_115.720
SRR6049663Rhizomagastrodiae_C368-T01_good_115.590
SRR6049664Rhizomagastrodiae_C368-T10_good_121.490
SRR6049665Rhizomagastrodiae_C368-T10_good_121.490
SRP279888GastroGastrodia elata tuber 20.96
JuvenJuvenile tuber20.36
Mother_GastroMother tuber of Gastrodia elata 20.82
Mother_JuvenMother tuber of Juvenile 13.45