Detail information of GWHGAAEX009440/evm.TU.scaffold_25.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209808894|ref|YP_002264432.1| | 4.00E-08 | exported glycosyl hydrolase, family 16 [Aliivibrio salmonicida LFI1238] |
| nr | gi|743887461|ref|XP_010910383.1| | 8.32E-125 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Elaeis guineensis] |
| Swissprot | tr|Q9XIW1|XTH5_ARATH | 1.00E-123 | Probable xyloglucan endotransglucosylase/hydrolase protein 5 (Precursor) |
| trEMBL | tr|E6Y2S0|E6Y2S0_BAMOL | 6.00E-124 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT5G13870 | 4.00E-123 | xyloglucan endotransglucosylase/hydrolase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 385996 | 389055 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009440
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 3 | 117 | 5.90E-39 |
| PF06955.11 | XET_C | 145 | 191 | 1.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | Cellular Component | cell wall |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.730 |
| SRR2545915 | Juvenile tuber | 16.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 98.550 |
| SRR5643514 | five period of Gastrodia elata | 66.700 | |
| SRR5643515 | five period of Gastrodia elata | 85.100 | |
| SRR5643524 | five period of Gastrodia elata | 77.260 | |
| SRR5643525 | five period of Gastrodia elata | 1.610 | |
| SRR5643528 | five period of Gastrodia elata | 7.200 | |
| SRR5643658 | five period of Gastrodia elata | 15.320 | |
| SRR5643659 | five period of Gastrodia elata | 101.600 | |
| SRR5643660 | five period of Gastrodia elata | 79.080 | |
| SRR5643661 | five period of Gastrodia elata | 103.810 | |
| SRR5643662 | five period of Gastrodia elata | 28.180 | |
| SRR5643663 | five period of Gastrodia elata | 67.860 | |
| SRR5643664 | five period of Gastrodia elata | 23.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 76.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 65.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 65.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 102.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 102.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.02 |
| Juven | Juvenile tuber | 14.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.64 | |
| Mother_Juven | Mother tuber of Juvenile | 5.05 |