Gene detail

Detail information of GWHGAAEX009443/evm.TU.scaffold_25.19

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1246	5.00E-104	DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain
nr	gi\|743805963\|ref\|XP_010927560.1\|	0	PREDICTED: lysine-specific demethylase JMJ705-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9STM3\|REF6_ARATH	0	Lysine-specific demethylase REF6
trEMBL	tr\|F6GTM2\|F6GTM2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42906.1}
TAIR	AT5G04240_1	5.00E-104	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	502974	548399	-

Transcript Sequence
>GWHTAAEX009443 AAAAAAAAAAAATAAAAAAAAAAGGCGGAGCGGAGAAGTAGAGTGCCGAAAGTGTGTCTCGGATGTTCGTCTTCCCCTGCGGACTCTCTGCTCACCAATTCCGGTTCCAAACCCCGCTCTGTGCTCTCTCATGCTTTCTTTCGGTCTCATCCATCTTCTACAAGCCAAGCCATTCATCGTAAGCAAATGCGGATCGATAGCTAAAGCTTGATTCAGCCCCTGTTCATCCCCCTCCTCCTGGTTCATGGCGGCCGACCAGCCGTTTGTTGAGATCCTCCCATGGCTGAAGTCCCTTCCGGTGGCGCCGGAGTACCACCCGACCCTCTCCGAGTTCCAGGACCCCATCGCGTACATCCTTAAGATAGAGAAGGAGGCCTCTGCCTACGGCATCTGCAAAATCGTTCCCCCACTTCCTGCCGCCCCTAAGAAGATCGCTTTTTCCAACCTCAACAAATCCTTTGCTGCCCGCCCACCCAACCCTAACTCTATTTCCATCCAAAACCCTAGCCCTGGATTCAACACCAAACGCTCCCCGACTTTCTCCACGCGCCATCAGCAGATAGGTTTCTGCCCCCGACGCCCCCGCCCGGTTCAAAAGCCTGTATGGCAGAGCGGTGACTGCTACACACTCTCCCAGTTTGAGGCTAAGGCCAAGCTCTTCGAGCTATCCTACCTATCCAAATCTGCCCCTGCTGCGGCTACCGCATTCTCCTACACTTCCTCCAGAAAGAAGAAGAAAACCAAACCTAAGAACAGCAAGAAAAAGTGTAACAAGAAGATGTCTTCTTCACCCCTCTCGGCGTTTGAGCTTGAAACCCTTTACTGGAAGGCCTGTGCTGACAAGCCCTTTTCTGTGGAATACGCCAATGACATACCGGGATCAGGATTTCCGCCCATTGGCAGCACCACTGGGAAGAGGTGGAGGGAGGAGGAGGCGGCAACCAATGTGGGGGAGACGGCCTGGAATATGAGGGGGGTGTCACGGGCCAAGGGCTCTCTGCTGCGGTTTATGAAGGAAGAGATTCCAGGGGTAACCTCCCCTATGGTTTATGTGGCCATGATGTTTAGCTGGTTTGCCTGGCATGTGGAGGATCATGAGCTGCATAGCATGAATTATTTGCATTTGGGCGCTGGAAAGACATGGTATGGCGTGCCTAGGGATGCTGCACTTGCATTTGAGGATGTTGTAAGGATTCATGGATATTGTGGTGAAGTCAACCCTTTGATGACATTTACTATTCTTGGAGAGAAAACCACAGTTCTGTCTCCTGAAGTTCTTATTGATGCTGGTATTCCTTGCTGCAGATTGGTTCAAAATGCTGGAGAGTTTGTTGTCACTTTTCCTGGATCGTATCACTGTGGATTTAGCCATGGGTTTAACTGTGGCGAGGCAGCAAATATTGCCACGCCTGGATGGTTAAGAGTTGCTAAAGAAGCTGCAATTCGGAGAGCGTCTACTAATTATCCTCCAATGGTGTCTCATTTTCAGTTGCTTTATGCTTTGGCACTATCATTGTGTTCAAGGAAACCCATGGCTGGCAATAATGAGCCGAGGAGTTCCAGACTAAAAGATAAAATGCGGGGTGAAGGAGAACTGATGATTAAGAAAACTTTTGTTGAGAGCGTTTTTGAGACGAATGAGCTTCTAAGCTATTTACTTGAGAAGGGTTCTTCTTGTGTTGTTCTTCCTCAGAATAAAACTGGCAGTTCTTTATCATCGAATTCATATGTCAGATCTCAAGTAAGGGTTAAACCGAGATTATCACTTGGATTGTGCAGTCGCGAGGAAGCACTGAAAGCCTCAGACGTTTTACCCTCTGACGATATCATACTTGATAAGAGTACTCGTACAAAACTTTTTAACATCTTTGGCTCCCCAAATCAAAACTCTGTAGCTGTATACCACAGAAAGAAGCATTTGACGACATCAATCGATCAAACTGTGACTGCCGAGGTTGCATCTTCCATACTGGAGTTGCAGAACCTGAAGGAGGAAAAAGAAAGCAATCTTGAAGGTGATGGTTTGCTGGATCAGGGCCTTCTATCTTGTGTCACATGTGGAATATTGAGTTTCGCTTGTGTAGCTGTTGTTGAACCTACTGAAGCAGCAGCTAGATACCTGACTTCTGCTGGCTGCAGCTCTCTTATTGATCAGAGTTTTGGTTCTGGAGAAATAAGCGATGTAGCTCATGATACAAAACTGCCAATGCTGCAAGGTAGCACTATTTTACAGTCAGAACGAATAGATGGGGATATTAATGATCATTCCAGCAGATATTCAACCCAGATCTCTGATGCTATCGAAGTCTGTTCTGAAAATTCCAAACAAAATGCCGTCTCCGCTCTAGATCTCTTAGCTTCTGCTTACGGCGGGGAGTCATCCGACTCTGAAGAACAGCTGCCACCTGAGAGGTCTGTATGCACGCATGAGAGCTATGCAAAAGAATTCCTATCAGCCTATAAACTCGACAAAGATCGGGTTGCGACTATTCACCCGGATCTATGGTTTGGCAAGGTTCCACTTGCAGAAGTGGAACATGAGTTGGCTTTACCTGCCGAGACATCTCGCTGCACCGCTGCTTCTGATGACCCGAAGAAGGCGAGAATCGAGAATGCTGATGACAGATATCTCCTGAATTTGGAGTCTTTCAATTGTCACAAGCCCGAACCCCCTGATTTGAAGAAAGATTTGGTAGCAGCAGACACAGCTGTGCAAAGATCTGACAAAGATTCTTCTAGAATGCATGTCTTCTGTCTTCAGCATGCTATGGAGGTTGAAAAGAAACTTCATTTGATCGGTGGCGTCCATATTATGTTGTTATTCCATCCAGATTATCCTAAAATTGAAGCAGAGGCAGTGGCATTGGCAGAGGAATTGGGAAGTGATTATGTGTGGCACAAGATTGATTTCAGGGAGGCCACTAAAAAAGATCATGAAAGAATCCAAGCAGCCCTAAAAGATGAGGAGAGCATACCTACCAATAGCGACTGGGCTGTCAAACTCGGCATCAATCTGTATTACAGCGCCAGTCTCAGCAAATCTCCACTGTACAGCAAGCAGATGCCTTACAATGCGGTTATCTACAAATCCTTTAGCTGCACATCGCCTAACAACTCCACAGCAAAAACCAAGGTTTCTGTGAGGAAGAAGCTTGGACGGCAGAAGAAGATGGTCGTCGCCGGCAAGTGGTGCGGGAAGGTTTGGATGTCAAACCAGGTTCATCCTTATTTGGCTTATCGGAGGGACACTATGGACGAAAAAGCAGATATCACTACCCCTATTTCTGTCATCGGATCAGAATCCAAGGGAAGCTCGGCAAATGATAGCAGCATTGTTGCTTCATCGAAAAAACCTACAAAAAGGAAGAAGATGCCGTTGCGGACGAAGTCCAATGATAATAAGAGAGAGAGGCTGAACCAATCGGATGGAGAAGATGATAAAACTTGTCGATCAAACGAAGGCAGGATTCTTCGAAGCAACAATGGATACTTTGAGTGCAGGCCGAGCTCCCGTCTCAGGCAACGGCCAATGAAATTCGAGGACAACAAGATTGCAAAGCCGAACTTCAAAAAGCAGAGTGAGAAGAGAGGAAATAAAAGAGGGCAGTGTTCTCCCATGTCATCATCATATGATGATGACGATGGGGAGTACGTATGCGATATTGATGGCTGCTCTCTTAGCTTTGGCACGAAGCAGGAGTTGTCGCTCCACAAGCGGGATATATGCCCCGTTAAAGGGTGCGGGAAGAAGCTGTTTTCGCACAAGTACATGATGCAGCACCGCAAAGTCCACATGGATGACCGCCCTCTAGAGTGCCCTTGGAAGGGGTGCAAGATGACATTCAAGTGGGCTTGGGCTCGAACCGAGCACATAAGAGTGCACACGGGGGACCGCCCATATATTTGTGGTGAGCCGGGCTGCAGTCAAACCTTCCGTTTCGTTTCGGATTTCAGCCGCCACAAGCGGAAGACGGGTCACTCAGCGAAGAAGTTTCGGCAGAGTTGACCAGCAAGAGGGGGACTGTTATAATTGTTTCTCTAGCTTAGCTGTTTCTAAGAGGTGAGTTGGAGGAAAGCTTGATATTTCGCCGTATTGCTCATCTCCAGCCTTGTCGTGCAATCCCCCTAATCAATGGAAGACTGACCCGACCAGTCGATTGGTCGGTCATTCGGCCGTTGAGAGGTTTTTATTTTATTGTAATTAGCTCTGATTGCCTTCTGTCATTGGTAGGAAACAACATAGGAATGATAGAGATATATTTGCTCGCCATCATTTCCCAAATAGATGCATTCTCAGTGCCTGTATTGGCTCCTTCCTCTTGTTCTTGATTCCAGAATGTGCTTATTTAAAAGCATAATTAGAACATTTGGTTTTTTCTTACCGCTTGCATTTATTTGGCTTTGAAGTTGAAACCATCTCTAAGAGTTTCAATGCCGCCCCATACAATATATTGTGAAGTCTACTGCCCTACAAAGTGTGCCTCATTCGCTCCCCTATCGGGACATACAATATGTGGGGAGCCTACTGCAGTACAAAGTTATGCGCTACACAGTAGAGTATAAGAGAGAAGCTTTTGCCACATTATGCCTATATTCTAATCTTAGAAAAGGAAAAGTTTTTATAATATACAAAATATGATGAATATATTCAAAAAATGGATATAATTTATTTATTGCATCTTTAACAGTATTTACATAATAGATTGTAAGATATGATGATTCTATGTTTTTTTTCTACTTGTTTCTCTGTAAATCTCCTTTTG

Network for GWHGAAEX009443

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.16	JmjN	21	54	3.90E-14
PF02373.21	JmjC	267	385	7.90E-36

Protein Sequence

>GWHPAAEX009443
MAADQPFVEILPWLKSLPVAPEYHPTLSEFQDPIAYILKIEKEASAYGICKIVPPLPAAPKKIAFSNLNKSFAARPPNPNSISIQNPSPGFNTKRSPTFSTRHQQIGFCPRRPRPVQKPVWQSGDCYTLSQFEAKAKLFELSYLSKSAPAAATAFSYTSSRKKKKTKPKNSKKKCNKKMSSSPLSAFELETLYWKACADKPFSVEYANDIPGSGFPPIGSTTGKRWREEEAATNVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHELHSMNYLHLGAGKTWYGVPRDAALAFEDVVRIHGYCGEVNPLMTFTILGEKTTVLSPEVLIDAGIPCCRLVQNAGEFVVTFPGSYHCGFSHGFNCGEAANIATPGWLRVAKEAAIRRASTNYPPMVSHFQLLYALALSLCSRKPMAGNNEPRSSRLKDKMRGEGELMIKKTFVESVFETNELLSYLLEKGSSCVVLPQNKTGSSLSSNSYVRSQVRVKPRLSLGLCSREEALKASDVLPSDDIILDKSTRTKLFNIFGSPNQNSVAVYHRKKHLTTSIDQTVTAEVASSILELQNLKEEKESNLEGDGLLDQGLLSCVTCGILSFACVAVVEPTEAAARYLTSAGCSSLIDQSFGSGEISDVAHDTKLPMLQGSTILQSERIDGDINDHSSRYSTQISDAIEVCSENSKQNAVSALDLLASAYGGESSDSEEQLPPERSVCTHESYAKEFLSAYKLDKDRVATIHPDLWFGKVPLAEVEHELALPAETSRCTAASDDPKKARIENADDRYLLNLESFNCHKPEPPDLKKDLVAADTAVQRSDKDSSRMHVFCLQHAMEVEKKLHLIGGVHIMLLFHPDYPKIEAEAVALAEELGSDYVWHKIDFREATKKDHERIQAALKDEESIPTNSDWAVKLGINLYYSASLSKSPLYSKQMPYNAVIYKSFSCTSPNNSTAKTKVSVRKKLGRQKKMVVAGKWCGKVWMSNQVHPYLAYRRDTMDEKADITTPISVIGSESKGSSANDSSIVASSKKPTKRKKMPLRTKSNDNKRERLNQSDGEDDKTCRSNEGRILRSNNGYFECRPSSRLRQRPMKFEDNKIAKPNFKKQSEKRGNKRGQCSPMSSSYDDDDGEYVCDIDGCSLSFGTKQELSLHKRDICPVKGCGKKLFSHKYMMQHRKVHMDDRPLECPWKGCKMTFKWAWARTEHIRVHTGDRPYICGEPGCSQTFRFVSDFSRHKRKTGHSAKKFRQS

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.700
SRP064423	SRR2545915	Juvenile tuber	9.440
SRP108465	SRR5643513	five period of Gastrodia elata	11.090
	SRR5643514	five period of Gastrodia elata	9.920
	SRR5643515	five period of Gastrodia elata	9.550
	SRR5643524	five period of Gastrodia elata	9.450
	SRR5643525	five period of Gastrodia elata	8.870
	SRR5643528	five period of Gastrodia elata	6.380
	SRR5643658	five period of Gastrodia elata	7.780
	SRR5643659	five period of Gastrodia elata	12.530
	SRR5643660	five period of Gastrodia elata	13.620
	SRR5643661	five period of Gastrodia elata	13.380
	SRR5643662	five period of Gastrodia elata	13.230
	SRR5643663	five period of Gastrodia elata	13.100
	SRR5643664	five period of Gastrodia elata	13.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.580
SRP279888	Gastro	Gastrodia elata tuber	9.89
	Juven	Juvenile tuber	16.33
	Mother_Gastro	Mother tuber of Gastrodia elata	6.55
	Mother_Juven	Mother tuber of Juvenile	7.66