Gene detail

Detail information of GWHGAAEX009446/evm.TU.scaffold_25.23

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1644	9.00E-127	U2-associated snRNP A' protein
nr	gi\|672129179\|ref\|XP_008788096.1\|	7.25E-157	PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Phoenix dactylifera]
Swissprot	tr\|P43333\|RU2A_ARATH	3.00E-127	U2 small nuclear ribonucleoprotein A'
trEMBL	tr\|M5XHK1\|M5XHK1_PRUPE	1.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:EMJ25439.1} (Fragment)
TAIR	AT1G09760	9.00E-127	U2 small nuclear ribonucleoprotein A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	687551	730287	-

Transcript Sequence
>GWHTAAEX009446 GTCTCAATATGCAGTTTAACTGTTCCTTTTAGTTTGGTCTCGCGATCTTCTTCACAGGCCGCAGCAAGACGCTCAGGGGAGCGAGCGCATTGGGTAGATTCGGCGCTTTGTTTGAAGTCTGATTTTTCGTTATTCTGAATCGCCTGGGAAGGTTTCTCAAGGGTTTAGATATCAGAAGCTAATAAGGAGGCCCATCCTTCCACTCAGGAGTGCAGAGCGCCATGGTCCGATTGACGGCCGACCTAATATGGAAAAGCCCCCACTTCTTTAACGCCATCAAAGAGCGCGAACTCGACCTTCGAGGAAACAAGATCGCTGTGTTAGAGAACATAGGGGCCACTGAGGACCAGTTTGACACTGTAGATCTATCAGATAATGAGATTGTTAAGCTTGAAAATTTCCCATACTTGAATCGGCTCGGCACCCTCTTAATTAATAACAACAGAATCACTCGTATCAATTCTGATGTTGGAGAATTTTTGCCAAAACTGCACACGCTGATCCTTACAAATAACCGGCTCGTAAATTTGGTGGAGATTGACCCTTTGGCATCCCTTCCTAGGCTTCAAACTCTTAGTTTACTGGACAATAACATCACAAAGAAACCAAATTATCGCCTTTACGTGATTTTCAGATTGAAAAAGCTAAGGCTGCTAGATTTCAGGAAAGTAAAACAAAAGGAAAGGATAGAAGCAGAAGGGCTTTTTGCTTCCAAGGAAGTTGAAGAGGAGGCCAAAAAGATTCCTGCTAAGACATTCACTCCAGGCGAAGTTCCTGTTGCTGCTGATGTTTCAAAGGAAGATCAAACACCAAAAGTTGTTGCGCCTACTCCTGAACAAATTATAGCCATTAAGGCCGCAATTGTTAATTCTCAAACACTTGAAGAAGTGGAAAGGTTGGAGCAGGCTCTGAGGTCTGGACAAATTCCTGCAGAATTTCACGTTTCTGGAAAGGGAAAAGAGTCCACCGGCACTGCCAAAAAAGAAGACAAAATGGAAACAGAGGGCGACAACGAGTCCAGCAATGTTGCGAAGAAGGCAGAGGAGAATGAAAATGCTGCTCCTATGGAACAGGACTGAGTCCCGTTGCAATGCGTTCTTGTTATTATTTTGTGGATGGAGAGATGACGGCCAGAAAGTGTTTTGGATTTTCAAAGCCTCTGTGAAGTGGGAAGCATTCTTTCTAAAATACTGCAGCTTAATGACACATTCGTTAGAAACTTTGAAATTCAGTTAATTATTCTGTTGAGGATTTTATTTTTCCTGGAGATGCCTTGCCTTAGTTGGCCTCTTTGCAGCAGTAGTTATTGCTTTGGCTGCAATTGCTCTTAAGCAGAGCTCCTTTGTTGGAGGGTTTAGATCAGGCTGATTGCGCTTCTTTTTTCGTGATAGGTAGGGCTGTAAATTGGCAGAGCTTGGGCTAGCTTAGACTGCTTGTGCTCGGCCATTTGGTTCTCGAGTTTTTATTGAGCTGAATTCAAACTCTGTTCTTTACAGAATTTTAAACAAAAATTTCATAGGTATTGTACCTAAAATTTTAAATGATGTTCATTCCTTAGGTTTAGTAGTTATAGAGTAAGCTCTTTCAATATCACATTTTTTAAGTGCATGGTATTTAATCTACTTACAATTACAAGGACTTAAATATTATACTTCTGTCTACCTATAATCAAAGTTCGTTTTACAAAGGTAAAATCAATATGGTATACATTTATTGAATTCATTTACTTAAAAAGAGTCTTCCCATGTGTAAATTCAACTAGGATAATTTCATTTCGTGCAAGGATGCCTATTGTAAAGAGTTCTATTGGAGGGGAACCACATCTTAATATAGGGTCAAGTTACTAAATTCTAATCCCTAAAATAGTTTAAGTTCTTTGTTAGGTGCGGGTGAAACAATTGGCTCAAGGAAGGATTGCCTATACTAATTTCAAATTCAGAGCTGTTTGTTGAGGTTCCTGCTGAAGAGGTGCTTGGCTAGGAGG

Network for GWHGAAEX009446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14580.5	LRR_9	1	174	4.80E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11092	SNRPA1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.030
SRP064423	SRR2545915	Juvenile tuber	35.660
SRP108465	SRR5643513	five period of Gastrodia elata	30.800
	SRR5643514	five period of Gastrodia elata	32.330
	SRR5643515	five period of Gastrodia elata	34.100
	SRR5643524	five period of Gastrodia elata	32.450
	SRR5643525	five period of Gastrodia elata	31.900
	SRR5643528	five period of Gastrodia elata	29.540
	SRR5643658	five period of Gastrodia elata	25.590
	SRR5643659	five period of Gastrodia elata	41.430
	SRR5643660	five period of Gastrodia elata	41.700
	SRR5643661	five period of Gastrodia elata	41.630
	SRR5643662	five period of Gastrodia elata	36.450
	SRR5643663	five period of Gastrodia elata	39.620
	SRR5643664	five period of Gastrodia elata	33.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.400
SRP279888	Gastro	Gastrodia elata tuber	47.10
	Juven	Juvenile tuber	45.32
	Mother_Gastro	Mother tuber of Gastrodia elata	24.75
	Mother_Juven	Mother tuber of Juvenile	37.80