Detail information of GWHGAAEX009448/evm.TU.scaffold_25.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-156 | FOG: PPR repeat |
| nr | gi|672167466|ref|XP_008803697.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVF9|PP245_ARATH | 5.00E-157 | Pentatricopeptide repeat-containing protein At3g21470 |
| trEMBL | tr|A0A096S2W9|A0A096S2W9_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G126664_P01} |
| TAIR | AT3G21470 | 2.00E-156 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 782368 | 784441 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009448
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 123 | 146 | 0.00017 |
| PF01535.19 | PPR | 154 | 179 | 0.69 |
| PF01535.19 | PPR | 187 | 214 | 3.60E-05 |
| PF01535.19 | PPR | 219 | 244 | 0.00061 |
| PF13041.5 | PPR_2 | 246 | 293 | 7.30E-09 |
| PF01535.19 | PPR | 322 | 346 | 0.0032 |
| PF13041.5 | PPR_2 | 350 | 395 | 6.40E-13 |
| PF01535.19 | PPR | 421 | 446 | 0.045 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.990 |
| SRR2545915 | Juvenile tuber | 0.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.640 |
| SRR5643514 | five period of Gastrodia elata | 0.680 | |
| SRR5643515 | five period of Gastrodia elata | 0.710 | |
| SRR5643524 | five period of Gastrodia elata | 0.660 | |
| SRR5643525 | five period of Gastrodia elata | 0.220 | |
| SRR5643528 | five period of Gastrodia elata | 0.040 | |
| SRR5643658 | five period of Gastrodia elata | 0.110 | |
| SRR5643659 | five period of Gastrodia elata | 0.930 | |
| SRR5643660 | five period of Gastrodia elata | 0.570 | |
| SRR5643661 | five period of Gastrodia elata | 0.690 | |
| SRR5643662 | five period of Gastrodia elata | 0.870 | |
| SRR5643663 | five period of Gastrodia elata | 0.880 | |
| SRR5643664 | five period of Gastrodia elata | 0.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.96 |
| Juven | Juvenile tuber | 1.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.33 | |
| Mother_Juven | Mother tuber of Juvenile | 0.35 |