Detail information of GWHGAAEX009450/evm.TU.scaffold_25.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG02808.00E-107Uncharacterized conserved protein
nrgi|672183776|ref|XP_008812176.1|1.43E-128PREDICTED: diphthamide biosynthesis protein 7 [Phoenix dactylifera]
Swissprottr|P43254|COP1_ARATH1.00E-10E3 ubiquitin-protein ligase COP1
trEMBLtr|M1CR77|M1CR77_SOLTU2.00E-122Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400072928}
TAIRAT5G630108.00E-107Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000030963248966472-
Transcript Sequence

Network for GWHGAAEX009450

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402052360.037
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.670
SRR2545915Juvenile tuber19.970
SRP108465SRR5643513five period of Gastrodia elata20.300
SRR5643514five period of Gastrodia elata32.450
SRR5643515five period of Gastrodia elata28.900
SRR5643524five period of Gastrodia elata28.210
SRR5643525five period of Gastrodia elata42.250
SRR5643528five period of Gastrodia elata43.520
SRR5643658five period of Gastrodia elata43.800
SRR5643659five period of Gastrodia elata34.610
SRR5643660five period of Gastrodia elata38.560
SRR5643661five period of Gastrodia elata35.500
SRR5643662five period of Gastrodia elata35.550
SRR5643663five period of Gastrodia elata41.490
SRR5643664five period of Gastrodia elata33.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.190
SRR6049655Rhizomagastrodiae_C368-T10_good_125.180
SRR6049656Rhizomagastrodiae_C368-T07_good_124.450
SRR6049657Rhizomagastrodiae_C368-T07_good_132.830
SRR6049658Rhizomagastrodiae_C368-T04_good_127.320
SRR6049659Rhizomagastrodiae_C368-T04_good_126.210
SRR6049660Rhizomagastrodiae_C368-T01_good_127.050
SRR6049661Rhizomagastrodiae_C368-T04_good_123.130
SRR6049662Rhizomagastrodiae_C368-T01_good_119.400
SRR6049663Rhizomagastrodiae_C368-T01_good_127.410
SRR6049664Rhizomagastrodiae_C368-T10_good_128.340
SRR6049665Rhizomagastrodiae_C368-T10_good_128.340
SRP279888GastroGastrodia elata tuber 54.15
JuvenJuvenile tuber51.01
Mother_GastroMother tuber of Gastrodia elata 108.64
Mother_JuvenMother tuber of Juvenile 64.84