Gene detail

Detail information of GWHGAAEX009454/evm.TU.scaffold_25.32

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4593	Mitotic checkpoint protein MAD1
nr	gi\|672166027\|ref\|XP_008802931.1\|	PREDICTED: myosin-11 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LTY1\|MAD1_ARATH	Mitotic spindle checkpoint protein MAD1 {ECO:0000303\|PubMed:22457071}
trEMBL	tr\|M0TNP3\|M0TNP3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P08400_001}
TAIR	AT5G49880	mitotic checkpoint family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1032734	1093868	+

Transcript Sequence
>GWHTAAEX009454 GTTTAATTTGAAGGAGCCCTCCTCCGGCAAGAATCACTCGATTCGTCGCAATAAGCCGTTAGCCCTTCACCTCTTTATCGACCTTCCAACTCTCCTCTTGGCCACGTACGATCGGCTGAACGAACTACTGTCGTTGGCTTCTCATTCAAACAACGACCACCACATCCTCACCCTAGCCACCGTTTTCTCCTCCATGGCCACCCGTTCTACGGGCCACAACTCTCCTCTTCATTAAGGCCTAATCAGCGATATAAAAAGGGTTTGTTCACGGCGAAAATGCCATGAGGAAAGCAAAAGGAAGATTGAAGAGACGGTAGTAAACAAGTCGTCTGAAGGACAAGCGGATAACTCTGAACTCTCTAAGGCACCATTCGAAGATGATCCTGAGAACTCCGCCACAGCGCAAGAGAAGGGTCGAATTAATCCCCGAACATGAAAGCCCCAACTCTGATCGTCGGATTATCCCTTATGTAGAATCTGTCGACCAGATGGTCTGCACCTATCACTGCCGTCAAATGGTCAAGTCAGAGTTTATGGCGTCTTTGAACTCTTCAGAGAAGCAAGTTATTGAATACAAATCTAGATTGGAAACACTAAGCAATGAGCTACGCAATAGTGAAGAAGAGCGTCAAAAATGTCGAGAACATCTGTATTCTATTGAGCAGGAGCTTCAAGCCTCAAAAGGGAGAGAAAATGCCCTGATGGAACAACTGCTTAAAGAAATAGCTGAGTATCAAGAGAAATATCATACCCAGTTGAAGCAATGTAGTGAGCTTCAGATACAACTTAAAAAAGAAGCAGAACTTCGTAAAAGTGCTGAATTGTCTGCAGAAACAGCAAGAGACAAAGCTTCGACCATTGAAAAGGAATTATTACTGGTTTCTGAGAGGAGTGAAAGGGAGAAAAGCCGCTTACATTTGTCTTTTTCGCATTTGCAAGATGACTCAAAGCTGACTTTGTCAAGGGCCAATGCTGAGCTTGAAAGAATGAGAATCCGAGCAGATAACTCTGAGAAGGAAGTAGAGCTACTTAAAAAGAGCTTAGTGGATTTAAGAGAACAGATGAATGAGTGTCTTCATGAGAAGTGTCGACTAGAGTCCAAGTTATCAAATTGCAATGTCCCAATAGTTAAATCCAGCACCTCAGAGTACCAAACGTTGGTAAAGCATCTGAAGGATGAACTGCGCAGAGCGGAAGCTGAAGTAGAAGAGGCCAGACAATTGAAGTCTTCTCATATGAGTAAAGAACTACTGGGTGAACAGTTATTAGAAGAAAAGGCTCGCAGGGAGAAGGCAGAGCTAGAGTTTACCAAGTTCCAGGAAATTCAAGCTCATGCTCAGATGCTGGAATCTGAATTAACATCATGGAAATCATTGCTGAAAACGATTCCTGATGTGTCATGCTATGATGACATCCCCAAAAAATATGCTCATCTGCAAAAAGAAGCTATTGAAAATATGCTGAAGGTTGGTAAGGCTACTGCACGTTTGACGGAGCTTCAGGTAACATTGGAAATGGCTAATCTTAGTAAAGAACATTCTGAAACAGAATGCAAACAAGCAAAAGAAGATGCCGAATGTGCATCTTTAGAGGTTAGGCGCCTTGAATTGATGCTATCATCAGTCTCTGAAGAATGCAATAAACTAAAAAGCGATGCTGCTAGCATGTGTATACAAAAGAATGAACTTTCTGGCAATCAAACAAATGAAAAAGTTATTAAGGACCTCAAAACATTGCTTGAGCAAAAGGAACATCTTATTAGAGGACTGGAGAGTAATTTAACTCAGCTGAGGGAAATTAGTAATCGTCAACATAATGAAATGAAGGCATTGAATGAGAATCTCAGTGTTGAAAAAAAAATGGTGAAGTCACTAGAGAGAGAGAGTGATCGGTTGCATTCTGAGATTTCCTTGCTTGAATCAAAGCTGGGACATGGTGATTTCTCAATAGCAAATACAAAAGTACTACGGATGGTGAATTCATTAGGCATTGATAACGAAGCAAAGCGCACTATAGATACATTGCAAGCTGAATTGCAGAAAGCTAAGGCAAAGCTATTAGCTATTGAAGAGCTAAGCGGACCACAATCTGATACAGGTCATATAGACATACCTGAAAAATTATCACAGCTCAAATCACAAATTGCAATACTTGAGAAGCGTGAAGAAAGATACAAGGCTGTTTTTGCTGAAAAGATTTCTATTTTCAGAAGGGCATGCTGTTCACTATTTGGCTACAAGATTTTAATGGATGATCAACAGCGTCCGAATGGGATTCCTGTGACTCGGTTTACTTTGCAATCTATTTATGCACAGAATGATGATGAAAAGCTTGACTTTGACTATGAGTCTGGAAATATAACCATTTTGGCCAATGAATACACTTTGCAGAGAGAAATACATCATCAGGTTGAGATCTTCGTGCAAAAGATGAACTCAGTCCCTGCTTTCACAGCAAATTTGACAGTGGAATTGTTCAACAAGCGCACCTTGAGTTGAAAAAGGGATTCAATACCTTTTTCTTACAACACGCTGGAGGATGAATGAGTTGTCTGCGACTTCATTAAATACAAATGATTTGAATTTTTTTATTACAAATATAAAAGTTTGTTATGAATGTGAAAAATGTAAACATTAAGCAAGTAGTTGAACACTTTCAAGAGTAGATTCCTCGGTTCATGTTATATGCAAATGATATTATCTTAATTGTTAAGTCTAGGGATGGAGTTAATACTTAACTTGAGTTATGGAGGATTACTCTAGAATATAAAAATTTTCATCTTAGTATATCTAAAATATAATATATGGAGTGTAAGTTTAATTGTACTAGAAATCTTAATCTCAAGGATGACTATTAAGGGTTATGTGATCAAGAATAATGAGAGACTCAAGTACTTTGGTTTAATTACTCAAAATAATAATGAAATAGAGAGTGATGTGATTAATA

Network for GWHGAAEX009454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05557.12	MAD	62	704	1.50E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06679	MAD1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0007094	Biological Process	mitotic spindle assembly checkpoint

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.550
SRP064423	SRR2545915	Juvenile tuber	61.080
SRP108465	SRR5643513	five period of Gastrodia elata	26.480
	SRR5643514	five period of Gastrodia elata	24.290
	SRR5643515	five period of Gastrodia elata	24.720
	SRR5643524	five period of Gastrodia elata	25.130
	SRR5643525	five period of Gastrodia elata	19.510
	SRR5643528	five period of Gastrodia elata	20.980
	SRR5643658	five period of Gastrodia elata	21.680
	SRR5643659	five period of Gastrodia elata	26.280
	SRR5643660	five period of Gastrodia elata	28.270
	SRR5643661	five period of Gastrodia elata	27.990
	SRR5643662	five period of Gastrodia elata	35.520
	SRR5643663	five period of Gastrodia elata	30.670
	SRR5643664	five period of Gastrodia elata	34.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.500
SRP279888	Gastro	Gastrodia elata tuber	29.01
	Juven	Juvenile tuber	34.62
	Mother_Gastro	Mother tuber of Gastrodia elata	25.04
	Mother_Juven	Mother tuber of Juvenile	33.69