Gene detail

Detail information of GWHGAAEX009455/evm.TU.scaffold_25.33

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1833	Nuclear pore complex, gp210 component
nr	gi\|743822307\|ref\|XP_010932243.1\|	PREDICTED: nuclear pore complex protein GP210 [Elaeis guineensis]
Swissprot	tr\|F4KHD8\|GP210_ARATH	Nuclear pore complex protein GP210 {ECO:0000303\|PubMed:21189294} (Precursor)
trEMBL	tr\|J3N078\|J3N078_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB09G26570.1}
TAIR	AT5G40480	embryo defective 3012

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1104970	1201526	+

Transcript Sequence
>GWHTAAEX009455 ATGGCAGTTGTCGTCATATTTTTGTTACTCTTGTCGACAGCAGCGACGTCGTCTTCTGGTCCTCACATTGCAGACCTCAACATTCTGCTCCCCCCTCGTTTGACAAATCCCGTGCAGTACAGACTTCAAGGGAGTGATGGCTGCTTCTCTTGGTCATGGGACCATCATGATCTTCTATTGGTTCAACCTGAATATAATGGTAGCAGTCAGTGTTCTACAAGTGCCAGATTGATATCAATTGCCCCGTATACTGATAAAATGGAAACTGCTGTCTATGCCACGGACATCCAAACTGGAGCTATGCTTCGCTGTAAAGTTCTTATTGATAAGATCTCCAAGATCAAAATATTTCATCATGCTGTCAAAATCAACTTAGATGAGCTAGCAACACTACAGATTACTGCATTTGATGATGAAGAAAATGTGTTCTCTTCGTTAGCAGGCTTACAGTTTTTGTGGCAGCTAACCCCAAAGTCTTTGGAGGCTGATGGCATGCATCGCCTTATACATGTTCCACTGAGAGAAACACCTCTCGGTGACTGTGTCAGCAATTTTTGTGGGGAACTGGACGTCCAGTTTGAACTGGAAGACAAAGGGTTAGGTTCAGACTTGTATGTTGTCAAAGGGATTGGAATTGGGCGTGAAATTGTTAAAGCAAGGTTGCTTGAGCCAGAACTAGAACATGTGGAAGATGAAATTGTTTTAACTGTTGCAGAAGCAATGTCTCTAGATCCTCCCTCACCAGTTTTTGTGACTGTTGGCACATTGATATACTACAATCTCAGGGTTATTTACCAAAATGCTCCTCAAGTGATTGAATTACCCTCACCGCATCATCTGTGGTCTGTGCTGAATTCTTCTGTTGCTCAAGTTGACAGTATGATTGGAACTGTGCATGCTTTACGCCTGGGAATAACAAATGTTGTTGTTGAAGACATCAGGGTTCCTGGTCATATTCAAACTTCTGCTTTGCATGTTGTACTTCCAGGGAGTTTGTTGCTATACCTTGTGCCCATCACCTCATTTTTTGAGCTTGTTGATGGGGTAGACCCGATTTTTTCTTCAGAGAACTGGTATGTTTTTCCAGGACAGTTGTACATAATTTGTACGAAGGCTTTCTCAGAAGGGTCTGATTCGAACGAGATACTTATCACAAAGAGCAATGAACTCAAGTTGGAAGGTGACACTGTGGCATCTTGGGATTTATTGTTTGTTCCTAAAGCTGCTGCAAAATATGACTGCCAAAATTCCAGATTACTTAAACCTTATTCTGTGGGAGAGGGTACTCTAACAGCTTCTCGTTTTTATCATAGTGATAATAATGATGAGGTTCAGATTCTTAAAGTTTTGCAAAAAGTTACTGTCTGTAAAAAGGTGCAGTTTAGCTTCAGAGAGCAAGTTGAGCCCTTAAATTCAATCCGCATACCCTGGGCACCTGGTATTTACCAGGAAGTGCAACTCAGGGCAACTGGAGGCTGTGGCAAACTAGTTTGGTTATCTGCTAATGAAGCAGTTGTTTCAGTGACTGCTGCTGGTTTTGTTCGTGGCATAAAACCTGGCAGAACAACTATTAAAGTTGTATCATTATTTGATTCGCTTAATAATGATGAGGTTGTTTTGGAAGTCGCTATACCTTCTTTTTTGTCTGTTCTTCCCATCTATCCTGTGGAGGTGGAAACTGGAACGGTACTCAAAGCTGCTGTGTCCTTAAAAACATCTGATAGCAACTACTTTTATCAGTGTGATGCTTTCAACTCTTACATGAGGTGGACTGTTTTTTCTGAAAGTGAAGCTTTCAGAGTTCTTAATAAGAATGAGAATAAATGTGAAGCCAACATACTTGACTTCTCAGTGGGCCCTAAACAATCCTACGGCCAGCCATGTGCATGGACTTGTTTATTTGCTTGTGGTACTGGTCGAGCCATGCTAAATGCAACTATAGCATCAGACTTGAATTCCCCTTTGCATCTCACGAATGTGCCTTTCTTTATAACTGCTGCGTTTCCTATTACTGCCTATCCTCCACTTGCTGTTTACCAAGCTGGAAATGGAAATAAATTTGGAGGCTATGGGATTTATATGCCTGAAATAAATAATGAAGTTAAACATTTGTATTCCACTGCTTTGGATGAGCTGATTCTTGCACCTGGCTCTTCAATGGACGTTCATTTATGTGGGGGGCCTGAGAGATGGGATCTGCATGTTGAGTATGTTGAAAGTGTTGAAGTTACTAACGAACAAGATTCAACAGTAACAGATGGTGTACAGGTGCAGCAGGTGCTCTCTAGTGGTAAAGGATTATACACAGCTTTATGCCTATCCTTGGGAAAATTTAAGCTACTTTTTTCACGGGGAAATCTTGTTGGTGTTAACCATCCTATTTCCACTATGGCAAACTTGGAATTGTCTGTAATGTGTAGCTTTCCTTCTTCAATAAGACTTATTGCTAATGAACCTGTAAATACTCTTGATGTTATAAAGGCTGCTGCAATTGCTGATCGCGACTCTAGTCAACTTCGTTCTGATCCTTTCACAGTGGCCTATGGTTGTACCATTCGTTTAGCTGCTGTTGGCCTATATGTTACTAAAAAGGCTTTTGCAAATTCTTCTTCTTTGTCCCTGAGTTGGGAACTAGTTGGTTGTAAGGATTTGGCTCATTGGAGTGACAAAGAAAGTCGCAAGCGATCAATAGATAACAATTGGGAGAAGTTTCTAGTTCTTAATAAACTGATTGGAAAGTGTACTGTTCGTGCTAGTGTTATTGGATTCTCTGAAAATTTTGCAAGCCATGCCTTGGGCAAAGAATATTTGCAGTTTGAAAGTAAAATCAGTATTCTGACGGAGGCTCTACAGTTACAGTTGGTTTCTTCCTTAAGTGTAGCTCCGAAGTTTGTGCTGGTACTTTTTGACCCTGAAGCAAAGGTGAATCTATCAATTTCTGGAGGGACATACATTCTTGATCCCTTTACAAATGACACCCACGTGGCACACATCTCTCAACCTTTAAAAAGAATGAAATGCTTCCACCTAGTAATCAGCCCCATGGGATTGGGGACTGCCCTCATGACTATTCGTGACATTGGGTTATCTCCTCCACTCGTTGCTTCAGCCTTGGTGAGAGTTGCAAATATTGAATGGATTAAGATCGCTTCTGAAGAAGAAATATGCCTTATGGAAGGGACTGTTAGAACTTTTGAACTTACGGCAGGCACTAATGATGGATATATCTTTGAGCCTTCTCAGTTTGCATTTGTAAATCTTCACATCCATCTTGAAGATGGAATGCTTGAGATTATTAGAATGAATAATTCATCAGCTGATTTTTTGGTTGGCCCAAAATTTTCGGCAAGAGCTACAACTGTGGGAGTCACAGCTATGTATGTTCGTGCAAGACAACGATCAGGACATGAAATCTTGAGCCAAACCATCAAGGTTGAAGTTTACAAACCATTGCAAGTGTATCCCAATTATATTTATCTTTCCCCTGGTGCTTCTTATGTGTTCACATCAAGAGGTGGCCCAAGCACTGGAGGCTTTATTGAGTATGCTAGCGTGCATGAAGCTACTGCAATAATTCAAACATCTTCTGGAAAACTTACTGCTATCTCTGTTGGAAATGCTAGTGTCCGTGCAGCATTTTTTGGGCAATCGGGAAACTTAATTTGTGAGGCGTATAGTAAAGTTGAAGTTGGTATACCATCAAAAATGATTTTAAGTTCACAGAGCGACCAACTGTGTATTGGTTGCAAAATGCCAATTTTTCCTTCATTTCCCCGGGGGGGTTTATTTTCTTTCTATGAGATATGCAAGAACTTTGAATGGAAGGTGGACAATGAAAAGATTGTGCAACCCAAAAATACAAGATCATTGACTTCAGATGTTGAGATTTTGCAATTGCAGTGTGCGAATGGATGGGCCACATCATGTCATTCCAGTGATAGTGATGTTGGATTTATCAAGACAATTCTCGGAAGATCTTCTGGCAGAGCAGACGTTTCCATTTCATTTTCTTGTGACTTCCTATCATCCGGCATCACACAAGTTGTACATTACACTGCTTCCAAGACATTGACTGTAGTGCCTGATCTTCCACTTGTTTATGGCATGACTGCGACATGGGTTCTCCCTCCTTCCTATACAACTTCTGATCTTCTTCCAGGCTTGACTGATTCTTATGGGTTAGATGTTAGCCACAAGAAAGGAGTTATTTATTCTGTGCTTAGGACATGCGAGAACAAGCAAGATTCTATTACTATCCATGGTGGTAAAATCAGAACGAGGGACAGCTATGATCTAGCTTGCATTATAGGAAAAGACCAAATTACCCAAAGAACAGAAGTTGCATCATGTGTACGAGTTGCCCAGATTGAACAAGTAAGGGTAGCCGCTGGAGAATATTCTTTCCATTCTGCATTCATTGGTGTAAATGGAAGAAGGCTCGAGCTATTAATTAGCTACTGTGATGAATTAGGATTTACATTTACTGAAGCAAATAGTGTGGTCCCACTTGATGTTGACATCAATTTCCCGGATGTACTATCTATTCAAAGGCCTGCTACTAAATATCTACAATCTGGTGAAAAAATTGTTCTACAGGCAAGGAGTCCAGGGAGAGCTCTTGTAAGGATATCGGTTAGCAGCAATCCAAATAAGGAAGACTTTATTCTGGTATCAGTTGGTGCACAAATGTTCCCTGAGAATCCTGTTCTGAATGTGGGGCATTCTATTAATTTTTCTGTAATTGCTGATGATGGTCTGCTTCCAGGTCAGTGGTTTTGCAGTAATGAAACTGTTCTGTATATAAATAAAATCACTGGAGAAGCTCATGCGCTTGTTGAAGGTCAAACTCAAGTTTTTTTTCAGGGTTCCAACTTTAAATTGCAGACCGTGGTTAATGTGATTAAGGTGAATCAGATTATAGTTGATGCCCCATCAGGCATCTTGACTAATGCTCCATTTCCATCAAATGGCTACAAGTTTTCTGTCAAATTTAGTGATCTCAGTGGTTACAACCACAAATACTCTGGCGGCCATTTTGAAGTTCCAATTGAGTGCAGGGTTGATCCACCTATCCTCGGGTATGCAAAGCCATGGATGGGTGATGGCGGGAGCGACCTTTGTTGCCTGTTCTTTCCTTACACACCAAAGCACCTAGAAATCAACTTCTTCAAATCCAAGTATTTGCTGCCAAAAGATAAGGATGACGGCGAAGGTTTTGTGCGTGTTTCTATGATTGCCAAGCTGAAGGACACCCCCTACGTTACTGGTTTTGCTCGTGCACTTTTTGTTGGTGGATTCTCAATTGGAATTCAGCAGCTAAAATTTACACGTAATTACAATCAGAGCAGGATAACTGTAACGGGCAATACTGATTTGGAAATATATTGGAATGAAAAAGATAATTTGCTTGTCACTTCGATTTTAAAAGAGGGTTCTGGCGTTGGAGGATTTGCGGAATATGATGTCAAAGTTATTGGAAGTCGCAATTTCAGTGATAAAATCATCTTCATTCTCCCTGCCACTGGTCAAAGGGAGGAAGTGGAGGTAATATACGAGAATGGAGGCGGCGCAAGTGAAGAGCTTAGAGTGACCAGCAACGTGAATTGGCCTGCAATCATCATTTGTGCTGTTGTTTTGGTGGCCACAATTTTTGTGTTTGTTAAGCTTATGGACCGGCGGCCTAGCACAGTAGCAGCAGCAGCACCAGGGCTTATTGCACCTGTCTCAGCACCCGTAGCAGAGTCTGCTGCGGCTGCATCCCCTGCAAGCAACAGTGAGTTGTCGCCGAGAACGCCACGGCCCTTTGTGGAATACGTGCGGAGGACCATCGATGAGACCCCATATTACCACAACAGAAATGCCAGAATGAGATTTGATCCCCACCGCACTTACTAGATTCTAAATCTTTTGTTATAGTTGAATTGGAACTGTAAGATACTGCCTTCATTCTTCCCCTTCAAGCCTTGTTCGTTCATTCTTTTTATTTTGTTTATGCTAATCACTATCTTTAGTTTTTTCTTATGAAATTTTATTTACTTGTGCATGTGTACATTTGTCAGTTAAGGCATACAATCTTTACGCTCATAGCACATTTTTTTTAAATAATACATATA

Network for GWHGAAEX009455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02368.17	Big_2	494	528	8.50E-05

Protein Sequence

>GWHPAAEX009455
MAVVVIFLLLLSTAATSSSGPHIADLNILLPPRLTNPVQYRLQGSDGCFSWSWDHHDLLLVQPEYNGSSQCSTSARLISIAPYTDKMETAVYATDIQTGAMLRCKVLIDKISKIKIFHHAVKINLDELATLQITAFDDEENVFSSLAGLQFLWQLTPKSLEADGMHRLIHVPLRETPLGDCVSNFCGELDVQFELEDKGLGSDLYVVKGIGIGREIVKARLLEPELEHVEDEIVLTVAEAMSLDPPSPVFVTVGTLIYYNLRVIYQNAPQVIELPSPHHLWSVLNSSVAQVDSMIGTVHALRLGITNVVVEDIRVPGHIQTSALHVVLPGSLLLYLVPITSFFELVDGVDPIFSSENWYVFPGQLYIICTKAFSEGSDSNEILITKSNELKLEGDTVASWDLLFVPKAAAKYDCQNSRLLKPYSVGEGTLTASRFYHSDNNDEVQILKVLQKVTVCKKVQFSFREQVEPLNSIRIPWAPGIYQEVQLRATGGCGKLVWLSANEAVVSVTAAGFVRGIKPGRTTIKVVSLFDSLNNDEVVLEVAIPSFLSVLPIYPVEVETGTVLKAAVSLKTSDSNYFYQCDAFNSYMRWTVFSESEAFRVLNKNENKCEANILDFSVGPKQSYGQPCAWTCLFACGTGRAMLNATIASDLNSPLHLTNVPFFITAAFPITAYPPLAVYQAGNGNKFGGYGIYMPEINNEVKHLYSTALDELILAPGSSMDVHLCGGPERWDLHVEYVESVEVTNEQDSTVTDGVQVQQVLSSGKGLYTALCLSLGKFKLLFSRGNLVGVNHPISTMANLELSVMCSFPSSIRLIANEPVNTLDVIKAAAIADRDSSQLRSDPFTVAYGCTIRLAAVGLYVTKKAFANSSSLSLSWELVGCKDLAHWSDKESRKRSIDNNWEKFLVLNKLIGKCTVRASVIGFSENFASHALGKEYLQFESKISILTEALQLQLVSSLSVAPKFVLVLFDPEAKVNLSISGGTYILDPFTNDTHVAHISQPLKRMKCFHLVISPMGLGTALMTIRDIGLSPPLVASALVRVANIEWIKIASEEEICLMEGTVRTFELTAGTNDGYIFEPSQFAFVNLHIHLEDGMLEIIRMNNSSADFLVGPKFSARATTVGVTAMYVRARQRSGHEILSQTIKVEVYKPLQVYPNYIYLSPGASYVFTSRGGPSTGGFIEYASVHEATAIIQTSSGKLTAISVGNASVRAAFFGQSGNLICEAYSKVEVGIPSKMILSSQSDQLCIGCKMPIFPSFPRGGLFSFYEICKNFEWKVDNEKIVQPKNTRSLTSDVEILQLQCANGWATSCHSSDSDVGFIKTILGRSSGRADVSISFSCDFLSSGITQVVHYTASKTLTVVPDLPLVYGMTATWVLPPSYTTSDLLPGLTDSYGLDVSHKKGVIYSVLRTCENKQDSITIHGGKIRTRDSYDLACIIGKDQITQRTEVASCVRVAQIEQVRVAAGEYSFHSAFIGVNGRRLELLISYCDELGFTFTEANSVVPLDVDINFPDVLSIQRPATKYLQSGEKIVLQARSPGRALVRISVSSNPNKEDFILVSVGAQMFPENPVLNVGHSINFSVIADDGLLPGQWFCSNETVLYINKITGEAHALVEGQTQVFFQGSNFKLQTVVNVIKVNQIIVDAPSGILTNAPFPSNGYKFSVKFSDLSGYNHKYSGGHFEVPIECRVDPPILGYAKPWMGDGGSDLCCLFFPYTPKHLEINFFKSKYLLPKDKDDGEGFVRVSMIAKLKDTPYVTGFARALFVGGFSIGIQQLKFTRNYNQSRITVTGNTDLEIYWNEKDNLLVTSILKEGSGVGGFAEYDVKVIGSRNFSDKIIFILPATGQREEVEVIYENGGGASEELRVTSNVNWPAIIICAVVLVATIFVFVKLMDRRPSTVAAAAPGLIAPVSAPVAESAAAASPASNSELSPRTPRPFVEYVRRTIDETPYYHNRNARMRFDPHRTY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14314	NUP210, GP210	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.570
SRP064423	SRR2545915	Juvenile tuber	17.610
SRP108465	SRR5643513	five period of Gastrodia elata	8.930
	SRR5643514	five period of Gastrodia elata	9.270
	SRR5643515	five period of Gastrodia elata	9.550
	SRR5643524	five period of Gastrodia elata	9.520
	SRR5643525	five period of Gastrodia elata	9.870
	SRR5643528	five period of Gastrodia elata	5.230
	SRR5643658	five period of Gastrodia elata	9.170
	SRR5643659	five period of Gastrodia elata	9.780
	SRR5643660	five period of Gastrodia elata	11.250
	SRR5643661	five period of Gastrodia elata	8.340
	SRR5643662	five period of Gastrodia elata	7.820
	SRR5643663	five period of Gastrodia elata	9.950
	SRR5643664	five period of Gastrodia elata	9.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.400
SRP279888	Gastro	Gastrodia elata tuber	12.97
	Juven	Juvenile tuber	12.93
	Mother_Gastro	Mother tuber of Gastrodia elata	9.33
	Mother_Juven	Mother tuber of Juvenile	8.47