Gene detail

Detail information of GWHGAAEX009460/evm.TU.scaffold_25.39

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|743763161\|ref\|XP_010911485.1\|	0	PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Elaeis guineensis]
Swissprot	tr\|O49287\|PP127_ARATH	0	Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial (Precursor)
trEMBL	tr\|A5C139\|A5C139_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68525.1}
trEMBL	tr\|A5C139\|A5C139_VITVI	7.00E-34	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68525.1}
trEMBL	tr\|A5C139\|A5C139_VITVI	2.00E-29	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68525.1}
TAIR	AT1G77010	0	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1352875	1355146	+

Transcript Sequence
>GWHTAAEX009460 GTTTGTAGTGCGGAACCGCACGAAATCCCTGAGAATGAAATTGGAACTCGATGAGCCTTGGGCTCCATTGGTGTGCGGCCAAGCTGCAGTTATGCAAAGGCAGTTCTTGGATCATACAGGGACAGCAGCTCCATCAGGTACTTCTCAAATCCGGCCACGCCGCCTCCGTCTTCGCTGCCAACTGCCTCCTCCGGATGTACGCGCGATGTGGACAATCTCTTTCCTATGCCCGCGGTCTGTTCGACGAAATGCCCCATCGAAACTGCTTCTCCTGGAACTGCCTCATGGACGCATGCCTCAACTCCGGAGACATCGCTTCTTCCCTCCAACTATTCTATGGAATTCCTCGCAAGAACGAGTACTCCTGGAACGCCATCATAACCGGCCTAGTGAGGTCAGGCAATATTCGAAATGCTTGGAAGCTGTTTGACGAAATGCCAACGAAGGATTCTATCGCTCTGAATTCACTGCTCCATGGTCTCGTCCGTAGTGGCAGAGCTCATGCTGCTCTGAGTCTTTACAAGAGACTGAATTCCGTAGCTGTTGGCCATTCAATGCTCTGCCTCGATTCCTTTGTGCTGGCAACCATTACAAATGCCTGCGCTGAGTGCAAGTCTCTTCATTCTGGCAGGCAAGTCCACTCCAAGATGATCCTCACCCAGGTACAGTTGGATCCTGTGTTGGGCAGTGCCCTCGTTGACATGTATGCAAAGTGCGAGGATCTCAACAGCGCCCAAAGCGTACTTCTGTGCTCAACAGTGGAGCCGAACGACTTCTCCCTGTCCGCCTTGATCACTGGCTTTGCCAACAGTGGCAGACCTGACGAAGCAAGAAGAATTTTTGACAGCGAGCGTGATCCCGGAATTGTGTTGTGGAATTCAATGATCACTGGGTATTGCGGTTCATACGCTAATGTTGAAGAAGCTTTGGATTTGTTCAAAAAGATGAAGAGCAAGGGAGTTGATCCGGATTCTTCAACCTTAGCTACTGTTCTGAGCGCATGCGCCTTCTTAGGCTCGCTCAGAAACGTGGTGCAGATTCATGCCAGTGTCGTCAAGCACGGAATGTCGGATGACATTGTCGTCGGAAGCACTCTGCTTGATTCATACTCAAAGGCGGGAGCTTGGGAACAAGCTTGCTTGGTTTTCGGGGAGTTCAAAGTCCATGATACGGTCTCGCTGAATTCGATGGTAAAAGTATATTCATGCTGTGGTCGGATTGCTGAAGCAAAGCAGGTGTTTGATCGGATTCAAGGAAAGAGTGTGATCTCATGGAACTCCATGATCGTTGGCTATAGCCAGAATGGCTTGCCGGACGAAGCACTAGGGCTTTTCTCCAAAATGCATATCCTGGATGTTGAGATGGATGAGGTGACTCTGGCCAGCGTCATAAGCGCTTCTGCTTCGCTCGCTTCGCTTGGCATCGGAGAACAGGCATTTGCCCGAGCAACGGTCTGCGGGCTTGAGTCGGGTCATATCATTGCTACATCACTGGTTGATCTTTATTGCAAGTGTGGTTATATGGCTGAAGGCTGGAAAATCTTTGAGGATATGAGAAAGGTGGATGAGGCTCCTTGGAACTCAATGCTGATGGGTTATGCTTCAATTGGAATGGGAGATGAAGCCATCCGATTGTTTGAAGCCATGCTAAGGGCAGGTACAGAGCCAAATGAGGTGACATTCATTGCGATCCTTTCGTCTTGCTGCAATTGTGGGCTTGTTGAAGAGGGCTTGAGATGGTTCCATTGCATGAAAAGTGAATATGGTGTGAACCCTTGCATGGAGCACTATTCATGCCTTGTAAACATGCTTGTTCGAGCTGGCCGACTAAAGGAAGCATTAAATTTCATAGATGCAATGCCTTTCGAAGCAGATGCTAGCATATGGACGCTACTTCTGGGTGGTTGCAAAGCTTCTGGAAATGAATTGCTTGGAGATAGAGTGGCAAAGAGGCTTTTTGAACTCGGCCCCACACAGTCTGGACCTTACGTTCAAATATCCAGTCTTTATGCTGCAAATGGAGATTGGAATAGATCATTAAGTGTTTGGTCCATGATGTATGAGCGCAGAATAAAGAAGAATACGGCTTTCAGTTGGATTTATAGGTAAAAGTTCTCTAGAAATAATGGGCATATGTATGTAGCAACTCTTAGGACCTTATGAGTTATAAGCAGAGCATTGCGCTGAAGTATATGTGAAGTTTTGTTAAACCTGATACTCTAATTTGTTCTTTTGTTATACCTGATACTCTAGTGTTGTAACTCAGTTGTCCC

Network for GWHGAAEX009460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	73	99	0.15
PF01535.19	PPR	104	132	4.00E-06
PF01535.19	PPR	137	160	0.043
PF01535.19	PPR	243	265	0.019
PF13041.5	PPR_2	270	319	6.90E-13
PF01535.19	PPR	347	370	0.4
PF01535.19	PPR	375	403	0.0018
PF01535.19	PPR	406	432	2.90E-08
PF01535.19	PPR	479	503	0.00056
PF13041.5	PPR_2	508	553	1.80E-10
PF01535.19	PPR	579	603	0.045

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.700
SRP064423	SRR2545915	Juvenile tuber	1.800
SRP108465	SRR5643513	five period of Gastrodia elata	2.020
	SRR5643514	five period of Gastrodia elata	1.780
	SRR5643515	five period of Gastrodia elata	1.080
	SRR5643524	five period of Gastrodia elata	1.250
	SRR5643525	five period of Gastrodia elata	0.360
	SRR5643528	five period of Gastrodia elata	0.170
	SRR5643658	five period of Gastrodia elata	0.180
	SRR5643659	five period of Gastrodia elata	1.990
	SRR5643660	five period of Gastrodia elata	2.070
	SRR5643661	five period of Gastrodia elata	1.980
	SRR5643662	five period of Gastrodia elata	2.180
	SRR5643663	five period of Gastrodia elata	1.630
	SRR5643664	five period of Gastrodia elata	1.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.080
SRP279888	Gastro	Gastrodia elata tuber	2.92
	Juven	Juvenile tuber	1.57
	Mother_Gastro	Mother tuber of Gastrodia elata	0.52
	Mother_Juven	Mother tuber of Juvenile	0.57