Detail information of GWHGAAEX009461/evm.TU.scaffold_25.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389867082|ref|YP_006369323.1| | 2.00E-28 | Fatty acid desaturase [Modestobacter marinus] |
| nr | gi|743806573|ref|XP_010927705.1| | 0 | PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|O24428|STAD_ELAGV | 0 | Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor) |
| trEMBL | tr|K3XIN5|K3XIN5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si001758m} |
| TAIR | AT2G43710 | 0 | Plant stearoyl-acyl-carrier-protein desaturase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 1414834 | 1432811 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009461
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03405.13 | FA_desaturase_2 | 70 | 390 | 1.30E-157 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03921 | FAB2, SSI2, desA1 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Fatty acid biosynthesis | map00061 | ||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0045300 | Molecular Function | acyl-[acyl-carrier-protein] desaturase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 543.640 |
| SRR2545915 | Juvenile tuber | 429.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 113.860 |
| SRR5643514 | five period of Gastrodia elata | 95.500 | |
| SRR5643515 | five period of Gastrodia elata | 116.290 | |
| SRR5643524 | five period of Gastrodia elata | 98.920 | |
| SRR5643525 | five period of Gastrodia elata | 134.360 | |
| SRR5643528 | five period of Gastrodia elata | 148.780 | |
| SRR5643658 | five period of Gastrodia elata | 155.420 | |
| SRR5643659 | five period of Gastrodia elata | 183.140 | |
| SRR5643660 | five period of Gastrodia elata | 169.000 | |
| SRR5643661 | five period of Gastrodia elata | 192.610 | |
| SRR5643662 | five period of Gastrodia elata | 343.090 | |
| SRR5643663 | five period of Gastrodia elata | 279.840 | |
| SRR5643664 | five period of Gastrodia elata | 352.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 167.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 139.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 171.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 179.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 197.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 220.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 182.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 181.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 150.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 185.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 137.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 137.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 295.06 |
| Juven | Juvenile tuber | 135.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 86.74 | |
| Mother_Juven | Mother tuber of Juvenile | 88.72 |