Gene detail

Detail information of GWHGAAEX009463/evm.TU.scaffold_25.42

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0320	2.00E-15	Predicted E3 ubiquitin ligase
nr	gi\|672141519\|ref\|XP_008794589.1\|	9.31E-40	PREDICTED: uncharacterized protein LOC103710584 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O64425\|RMA1_ARATH	3.00E-06	E3 ubiquitin-protein ligase RMA1
trEMBL	tr\|M0RSG4\|M0RSG4_MUSAM	7.00E-33	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P15340_001}
TAIR	AT3G07200	2.00E-15	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1487026	1497814	+

Transcript Sequence
>GWHTAAEX009463 TAAGTTGCCACATCTTCTTCATAGAAGCTAGTATAATTAATTAAGAATACTAAAGGCGAAGCTGATTGAGTAAGAGCTCTATATCTCATGGATAACACCTAGTTATTTGTTGAAATCAATCGTTGTCTTAAAACCCTAAGTGAAAGCACTAACAGTAATCGAACCGCCCCAAACCCTAACACGCTTGAGTGCGCGGTTCAAAATACTCCATTTAAAAATGCGGCCCAGACCGGACTGCGAATCGAATGGAACGGGCCCGGTTTGGTTCAATCCGTGAAGAATATCGTTCTGTAACCCCGCGATCTGCTTCTTCGTAATCTTCGGCGACGAGCGTCTCGTCTCGTAAATATACTTTTTGGGAAACGCAAAAGGGAAATCCCCTCTAAATACCAGCCGGGAAACGCTAAGGGCCGTATATGAAAACTCTTCTTCCAAAAAAAGATTCTGCAGTATATGCAAGGGAGTGCCTCTTCGAGCACAAGCCGAGGAGCCGTTCCCCGCCAAGAGGTGCTTCTCCCTCACAGAGTTTATCTAGGCACTCACTGGCTAAAAAAAAAAGGTGGACAAAGAGACTAAAACCTGTAAAGATGGTTTTGAACTTTGATCTGAATGAGCTTCCTGCTGAAAGCCTTCAGCTTGAGGGTGATGTTGCTCCTATTGATATGCAGCTTGAACAGATAACTACTTATGAAAGTTCTGGATCTTGTACTCCACCAATTAATGCAGATGCCATCAATAATGATCTCGTATTACTGCCTTCCTCTACATGGTTTCTTCAGGCCAAGTACCAGTTGAAGAGGCAGCGGTCAATTGCAATGGTCCTTGATGAGAATTTGGAAACAAATAATTTGCAATCAGGGCTTATGGAAGAACCAGTAACTACTTTGTCTCTTAGTAGCCAAAATATACACACTCTTTCTCATTTGGGAAGGACGATTATTGGCTGTGATCTGAATAACAACGCAAGTGAAGGCTGCACTCCAAAAGTAATGAGGAGCAAAGGATTGGAGCCTAATCACAAAGAGACTAATCTAACGTGCCCTGTGTGTTTAGGCGCTCTGGAAGCGCCATCTGCCACAATCTGTGGACACTTGTTCTGCAATGGCTGCATTGAGACGGCCATCACAAAGCAAAAGAGGTGTCCTACATGCAGAAAAAAACTCACAAAGAGAAACTTTCACAGGATCTATTTCTCATGTAGATGATTTTTTTTTGGGAGGGGAGGGTAGATAAGTACTTGCATAACACCCAAATCTTAGGCAATTTGCATATCTAACACTCAACATTGAACAATCAACCATTAATGTTTTAGCAAACTTCCATCTAATCTTGTATCATGCATAAAACCTAGCACATTAGCAATGCTTGGAAGAATTTGAATGGCGGTGGTTTTGTAAATATCAAACTTTGAATGTTAGATGTATAATTGAAAGTTGAGTGGTTGTATGAATCCCTTTGTTTTGTTTTTTTTTTCTTAATTTGATTATTTATTTAGCTAATTTGAAGATAAAAATGTGTAAAGGGTGATTGATAAAATCATATTGGCATTTTCATGAAAATAATCCATTTTGC

Network for GWHGAAEX009463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.5	zf-C3HC4_2	208	245	1.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.070
SRP064423	SRR2545915	Juvenile tuber	21.370
SRP108465	SRR5643513	five period of Gastrodia elata	9.440
	SRR5643514	five period of Gastrodia elata	12.790
	SRR5643515	five period of Gastrodia elata	11.080
	SRR5643524	five period of Gastrodia elata	12.910
	SRR5643525	five period of Gastrodia elata	10.630
	SRR5643528	five period of Gastrodia elata	11.520
	SRR5643658	five period of Gastrodia elata	10.800
	SRR5643659	five period of Gastrodia elata	11.420
	SRR5643660	five period of Gastrodia elata	9.750
	SRR5643661	five period of Gastrodia elata	10.310
	SRR5643662	five period of Gastrodia elata	11.360
	SRR5643663	five period of Gastrodia elata	11.560
	SRR5643664	five period of Gastrodia elata	10.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.780
SRP279888	Gastro	Gastrodia elata tuber	15.56
	Juven	Juvenile tuber	13.38
	Mother_Gastro	Mother tuber of Gastrodia elata	17.60
	Mother_Juven	Mother tuber of Juvenile	11.57