Detail information of GWHGAAEX009468/evm.TU.scaffold_25.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683200|ref|YP_001866396.1| | 8.00E-07 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG0027 | 7.00E-44 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|672164761|ref|XP_008802268.1| | 9.94E-56 | PREDICTED: probable calcium-binding protein CML41 [Phoenix dactylifera] |
| Swissprot | tr|Q8L3R2|CML41_ARATH | 2.00E-44 | Probable calcium-binding protein CML41 |
| trEMBL | tr|B9T4V6|B9T4V6_RICCO | 5.00E-49 | Calmodulin, putative {ECO:0000313|EMBL:EEF29107.1} |
| TAIR | AT3G50770 | 7.00E-44 | calmodulin-like 41 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 1664439 | 1665313 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009468
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 44 | 102 | 1.30E-08 |
| PF13833.5 | EF-hand_8 | 135 | 182 | 6.60E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.430 |
| SRR5643514 | five period of Gastrodia elata | 2.580 | |
| SRR5643515 | five period of Gastrodia elata | 1.100 | |
| SRR5643524 | five period of Gastrodia elata | 1.860 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.540 | |
| SRR5643658 | five period of Gastrodia elata | 0.160 | |
| SRR5643659 | five period of Gastrodia elata | 206.180 | |
| SRR5643660 | five period of Gastrodia elata | 349.280 | |
| SRR5643661 | five period of Gastrodia elata | 148.180 | |
| SRR5643662 | five period of Gastrodia elata | 86.280 | |
| SRR5643663 | five period of Gastrodia elata | 35.140 | |
| SRR5643664 | five period of Gastrodia elata | 66.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.64 |
| Juven | Juvenile tuber | 0.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.09 | |
| Mother_Juven | Mother tuber of Juvenile | 0.05 |