Gene detail

Detail information of GWHGAAEX009469/evm.TU.scaffold_25.49

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2699	8.00E-81	Predicted ubiquitin regulatory protein
nr	gi\|225433606\|ref\|XP_002273725.1\|	2.84E-116	PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
trEMBL	tr\|D7SNI5\|D7SNI5_VITVI	1.00E-116	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17214.3}
TAIR	AT1G04850	8.00E-81	ubiquitin-associated (UBA)/TS-N domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1691630	1725287	+

Transcript Sequence
>GWHTAAEX009469 ACTGAGAAAAACAAGGAATTTTTATTTTCCTGGTCATGGAACCTCTTCCTTTGAGTGCTTCCAGCGTTTCTATCGATTTCCCTTTCCCCTTTTCTCTTCCTTTGGGATGCGGAAATCACGGATCCTTTTTAATAATATGCATGGTGGAGGAGGATACAAGTGGAGCGGAGGATAGGCGAGCTTATAGTGGACAAAGAGCGCGCAGCTTCGGAAAGCAATTTTACCGGAGGCAAGGCCTTTTATTTTTCCCTTCTACTACATAGTGAAATCCCCTATAGAGCCGATGTTTAAAATGATTGAAGGTCTCTAATAGACCATACCACCATTAATTCTTTGCGTTACTGGTCTTCTTACTTTTTTGTGTTTTTGAGCTTATGTGTGTGCAAAGTTGGGTATTATGGATAACAAGCTCACTAGTCCAAACATAAAAACCTTTGAAATAATTGGCTAAACTCCTGGCCAAACAGTTCAGGCACAAGTATATTTTCATGCAAATAACAACCATACTATTTTGTCATAGCAGCTAGCTTATTAGGCTTAATCTAGGCTAAGCTTGAAATTTATATGATTAATTACTTGGTTTAATACTAAATGTGGATGATAATGACAAACTTCTTTATTTGACTACCCATTATCAAGGCAAGTTGAGAATTGTAATCTTTATTAGAGGACCAATTTTACAATTTTCTTCATTAAAATGTGATGATATTTTATTAATCTTGTCTCTTAATGTGATTTGAATTAAAATAAATTACATGCTATCGTTGAATTGAAATAATGCCATCGACATCATTGGAGTATTCATTGTTTATTTTTATTCTAAATTTGGCATTTTTTTATGAATGGTTGACGCTGGATAATTGATAATGCAAAAGTATTGTCAGCTTCATGATTAATTTAGCAGAGAAGAATGCGTTCTTTCAACTTTATTTTCCTTATTTCTGAATTATTCTTTCATACTTTAAAAGCAATGTCTCTGCCTGGGGTTGATAAAAGAATGCTTCAAAAACTCGAGTCCATGGGGTTTCCAACTGGCCATGCTACAAGAGCACTTTATTATTCTGGTAATTCTAACATTGAGAATGCCATCAATTGGGCTTTAGAACATGAGCATGAATCAGACATTGATCAGATTCCTCAGGTGCCTATAGACATAACAATTGAATCAGGCGAACTTTTAAATGTAGGAGAAGAACTGAAGATGAAATTAAAAGAATTAAGGGAGCAAGCATTGACAAAAAGAGAGGAGGAAAAAAGGATGGAAAGAGAACAAGAGAAGGAAAGAATAAGAAGGCACAAACAGTTGGCGGAAGATAAACACCATGGCGAGGAGAACGAACGGCAACGAATTGCTGCCATCCAGAGAGCAGAAAGGGAGGAGGAAAAGAGAGCTCAGCAGAAGATTCACAGTCAGTTGGAACTTGATAAGGCAGATAGGAGGAAGCTTGGATTGCCACCCAAGAGTATTAGCACTGTAAAACACACAACGGCTCTGATACAAGAAAGGAATGTAGTTAAGGGTTCAGGCCACGTTTTTCTTTCCATGGAAGAGTCTCTTAAAAGTTGTCTAAGGTCTCTCAAGAAGAACCACAAGGATGATGATACTGAAGTGAAGCAAACCTTCGAGACACTCTTTAAATACATCGCGAACGTCGCAAAAAATCCGGACAATGAGAAATATAGGAAGATCAGACTCAGCAACCCGCAATTTCAGGGTCGAGTCGGTAAATTCAAGCAGGGCATTGAGTTTCTTGAGCTCTGCGGATTTCATAAACTGGAAGGCAGTGAATTCCTGTCTATGCCCCGAAATAGGGTTGATATTCATACTCTGAATTTGGCTGGATTGGCATTAAACTCGGCCATCTCAAATCCTTTCTTTGGAATGTTTTCTGTGTAGATGATGATGATGACGATGAAGTTTATTGTTTGAACACTGTAATTCAAGAAATATAACATCATTTGCAATCGTTGTCACAATAATAATTTAAAGAAATTGTAAATTATTTATTATATCTTTGCAGGTTGTATAAATCCCTTGCTAGTTCTATGGATGGCTATTGTTCATAGCTTGATTGATCATTTACAAAAGCTTTTCAATTATGGTTCTCTAGGCTGTCTTGCCCTTTGCTCGACAAGTAAAAGCATGATTATGTCTTTCTGTTATGCTGACATATTGGAACTTCAAAGTATCAATGTGAATGCTTCATTGGCCTATGGCCTTACCTTTGATATTTTTTATTCACAA

Network for GWHGAAEX009469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00627.30	UBA	27	62	4.10E-08
PF09409.9	PUB	233	302	4.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.840
SRP064423	SRR2545915	Juvenile tuber	5.580
SRP108465	SRR5643513	five period of Gastrodia elata	6.720
	SRR5643514	five period of Gastrodia elata	8.360
	SRR5643515	five period of Gastrodia elata	6.490
	SRR5643524	five period of Gastrodia elata	7.910
	SRR5643525	five period of Gastrodia elata	11.780
	SRR5643528	five period of Gastrodia elata	11.550
	SRR5643658	five period of Gastrodia elata	12.240
	SRR5643659	five period of Gastrodia elata	12.590
	SRR5643660	five period of Gastrodia elata	13.840
	SRR5643661	five period of Gastrodia elata	10.020
	SRR5643662	five period of Gastrodia elata	12.670
	SRR5643663	five period of Gastrodia elata	14.680
	SRR5643664	five period of Gastrodia elata	13.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.870
SRP279888	Gastro	Gastrodia elata tuber	15.65
	Juven	Juvenile tuber	7.97
	Mother_Gastro	Mother tuber of Gastrodia elata	10.36
	Mother_Juven	Mother tuber of Juvenile	9.43