Gene detail

Detail information of GWHGAAEX009470/evm.TU.scaffold_25.51

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|406024929\|ref\|YP_006705230.1\|	2.00E-06	Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
KOG	KOG1873	3.00E-83	Ubiquitin-specific protease
nr	gi\|743802845\|ref\|XP_010926760.1\|	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Elaeis guineensis]
Swissprot	tr\|Q8W4N3\|UBP2_ARATH	8.00E-84	Ubiquitin carboxyl-terminal hydrolase 2
trEMBL	tr\|A0A061EJT6\|A0A061EJT6_THECC	2.00E-164	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR	AT1G04860	3.00E-83	ubiquitin-specific protease 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	1776108	1795694	+

Transcript Sequence
>GWHTAAEX009470 GGTAATTTTAGGGTTATATTCGTCGAACCAATAGAGCTTCCACGGCCATGCGCAGGCTGAGCAATGGCAGTTCATAGATAAACCCTTCGTAAACATTAAGGAGCCTGGCCATCGTCGTTTCTTGGAGCTTTCTTCTTCTCCCCTATCTCTAGTTCTCGACGATCGTACTTCTCTCTCTTTTAACTAAGATCAGGTGAAAGAATATCAACATTTTTGCACGTTGAAATACTATAGTCTCCTCCATATTCATCCATCTGTGATCGAAATCTACCTGTTATGTTTTTATTGTTTGGACTTGGCTTTGGGGCGTTTTTATATTTGAAGTTATGATCTTGGTTTCTCTTCAGCAGCGATTGTTGAAATAAGTTCCTTTTTGTTAGGTTCCTCTCTGCTGCAAATCTTACGGTCCTTTTTTGTTTTTTTAATTCATTTTATTCATTGATAAGTATTAATGGGGAAGAAAATGAAGAAGAAGGCTCCAAACCCTCGTAAAATTCAGCATCGGGCAGCTTCCGCAGGATCTCAAAAATTGGTTCTTCAGGACTCTGGTGGTGATGGGGATAGTGATAGCAAGGCTTGCAAACATTACACTAAAGGCACTGTTGAGCTGAATCGGGTTTTAGTTAAAATCCGATCCTCTTCCAGGGATGTTGTTGCCTGTGAGAATTGCAGGGAAGAACGGGTTAACGGGGGAAAGGGGAAGGAAAGAGGTAAGCAGCCCAAAAGGAAAGGTTCTGGAACAAGAGTTTCTGAGTCAAAATCAAATGCAAATTTATTGTGGGTTTGCTTAGATTGTGGCCGATATTTTTGTGGTGGTGGAGTGAGTATGTTGGAGCCTTATGGTCATGCTAGGCGACATGCTAAGCAGGAGCATCACCATTGGGCAGTTCAAGCGGATGATCCACTTATCAGTTGGTGCTATTCTTGTTCGTCTTCTGTGCCTATAGAGATGCCAGAGGAGGTAATTGAAGTAGAAAATGAGGCAGCCATGAATGACAGGAGTTGGAGTTTGAGAGGTATTGCAAATGAGCCTTTGGATTCTGAGAAATTGAAAGGGCACAAAGTTAGGGGGCTCTTAAATTTGGGGAACACTTGTTTCTTTAATTCTGTAATGCAAAATTTTTTTTCTTTGGATCCTTTACGAAAATATTTAATATGTTTGGAGAGGCCTGCTGGCCCTCTTTTTACGGCACTTAGGACACTTGTTGTAGAAACAACTAGAGGAGCAGATTCTAAAGGTGTTATAAGCCCTAAAGCTCTATTTGGATGCATATGTGCTAAAGCACCTCAGTTCAGGGGTTACCAGCAGCAAGACAGCCATGAATTGCTTCGCTACCTGCTCGATGGATTACATGTGGAGGAAACAAATGCAAGAAAAGCATCCGGGCTTTCTGACAATGGTGAGAAAATCAACACAAAAACAAAAGCTACTATAGTTGATGCCATTTTTAGTGGCCAGCTATCAAGCACCGTGTCTTGCATGGAATGTCATAACACTTCTGTTGTGAATGAGCCATTTTTGGATCTCTCGCTGCCGGTTCCTTCAAAGAAGCATTCCTCTAAAAGGGTTCCACCATCTTCTCCAAAGAAGATTAATCAAAGGGATAAAAACAAATCACTACAATTTCGGTCAAAGGGGTTAACTCGAGTGTCTACTGAGAGTGTGAACCTGAGTGCAGAAAGCACTGAAAAACCTTCAGAATGCAGTGAATCTGGCACAGCTGTACCACTTCCAATTAATGATAATGCTATGGAAGCAGGGGATTTTACATGGATGGATTATATTGGAGCTGAGACAACAATTTGCAATGACTCTAGTGCTCTTGATTTGGAAACTAGCAAGCAGGTAAAAGAAATTAATAGCATCGAACATTATGATCATGAAGTGCATGAAGATGCTGAGAGCACTGCGCAATGTGTTTCTGAATTTAATGCCAGTTGTTCTAACAATTTAACAGTGTCTTTGGATGCATTTGCTGAGTGTTCTTGTAAAGATGAAGTTCCTCAATCTTGTGCTTCTATTTCTGATGTCATATTACTTCCCTACAAAGAGCAGGAGCAGGAGAAGGAGCAAGAGCAATATTGGACTTCCTTGGATAGAAATTCTTTTTCTCAAGTTCCAGACAATACAAATATAATTGATATCTCCTTAAGCGTGTCTTGTACGGCAAAATTTAGTTGCAATCAAGCAGAGGAAGAGTTTGATGGCTTTGGTGACTTGTTTAATGAGCCTGAGGCTACTTCTTATTTAAACACCGAAACTAATGCAGAAGAAGATACAGACATAACTTTGTGGATTCAAAACATCCAAGAATCAAGTTTGGAAGAGCTTGATGATACAAATACGCTAGTATCAATTAATAGCTGTCTTGCCTTATTTACTAAGCCAGAGATTCTTTCTGATGAACAAGCATGGTATTGTGAGCACTGCTCTAAGATGTTGAAAAAGACTAGGGAACACGAAGTAAGCAAACTGCAAGCTACAAATCTGCATGTGACTGTTAGGCCAAAGATGGATGAAGATGAAATCCCAAGTAAAAAGGATGTAGCCAGCTTCCATGAGGATTCTGCCAGTACCAAAGTCTTGGATAACTGGAGAATCAATGCCTTCCAGAAATTAGCTAGTCAAGCTGAATATTCACTAAACAATGGAGATTCCAACAGAAATGATACCTTAGAGACTGCTTTTTGCACCAATATGACTTCTTGTCCTGATGTTCTTGACAGAGACATGTCAGAGTCAGAGACATCTCAATATTTTTCAACTTCAACATGTGTTAATAGTAGAGCACAAGATTGTTCAACTAATGAAGAAAGCAATTTTCATGGCATCAATGATCATAGTATTGAAAATGATGGGAAAAAGACAGAATTTGATTCTCATTATTTGCGGTCTCATACAAATAAATGTGTGCACATGCCTTGTGAAGATAGATCCCAAGCAGTTAATCGAGTGAGGAAGAAAGGTATAAAACCAGACAATGCTTATCCAGATAGGGACAACAAGGGTGAGGGAATCAAGATGGTCAAGAGAGTTGCAACAAAAAGGATTCTAATTAACAGAGTCCCACCGATCTTAACGATTCATTTAAAGAGATTTAGCCAAGATACTCGTGGCCACTTAACTAAATTGAGTGGTCATGTTAGCTTCCAGGAAACACTTGATTTGAAGTCGTACATGGATCCAAGGTGCATTGAGGACCGAACCTTGTACCATCTCACTGGGGTGATTGAGCATATGGGGAGTATGGGAGGGGGCCACTATGTCTCCTACACACGGGGCGAGGGAAGAGGAGACAGTAGCAGCAGCAGCAGCTGTTGCACAGGGCAGTCCTGGTTTTATGCTAGTGATGCTTATGTGAAGGAGGTTTCTTTGGCCGAAGTGCTTCGGTCTGAGGCTTATATTCTATTTTATGAGAAAATGTGATGTGAATTCATTTTTATAGTTCATTTCATTTTTGGGGGGAGGTTGAATTTTCTGGCATGATGCTCAAATCTTCGGTATATGCATTCAAATGCCGGATCTTCGATATTTGCAAAATGTATCACCTAATTTCGCGCATGCATGGATTCGCATTAACTTAACGATGGCCGGTGGTTTTGGTGATGATTGAACTTGGGTGGTACCTTTGTAAATATTGAAATTTGGGTGTTAGAGATGTAAATAAGAAGGATTTGGGTTGCATGCATTGAAAACTAGTGGGATTAACACTGGATTGATTGTTCTATGTAGTTGTTCTCTTTAATTATTTTTTACAAAATATTGAGAGCAGTAGGCTTTAAGTTTTTTGGGGAGTTGGGTGAAGCCTTTAACACAGGGCCCGTTGTTAAGTTTATATTTTTTTGACTTGTATACTTGTAATGCTGCTTTGAGAAGTGGAGCTCATTTTGAAATGAATATAAGCATTTTATCTTACATTGAAGTTATCATAGAAAGGTGCTCTTTCTTTTA

Network for GWHGAAEX009470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.18	zf-UBP	70	164	5.20E-15
PF00443.28	UCH	207	988	1.50E-50

Protein Sequence

>GWHPAAEX009470
MGKKMKKKAPNPRKIQHRAASAGSQKLVLQDSGGDGDSDSKACKHYTKGTVELNRVLVKIRSSSRDVVACENCREERVNGGKGKERGKQPKRKGSGTRVSESKSNANLLWVCLDCGRYFCGGGVSMLEPYGHARRHAKQEHHHWAVQADDPLISWCYSCSSSVPIEMPEEVIEVENEAAMNDRSWSLRGIANEPLDSEKLKGHKVRGLLNLGNTCFFNSVMQNFFSLDPLRKYLICLERPAGPLFTALRTLVVETTRGADSKGVISPKALFGCICAKAPQFRGYQQQDSHELLRYLLDGLHVEETNARKASGLSDNGEKINTKTKATIVDAIFSGQLSSTVSCMECHNTSVVNEPFLDLSLPVPSKKHSSKRVPPSSPKKINQRDKNKSLQFRSKGLTRVSTESVNLSAESTEKPSECSESGTAVPLPINDNAMEAGDFTWMDYIGAETTICNDSSALDLETSKQVKEINSIEHYDHEVHEDAESTAQCVSEFNASCSNNLTVSLDAFAECSCKDEVPQSCASISDVILLPYKEQEQEKEQEQYWTSLDRNSFSQVPDNTNIIDISLSVSCTAKFSCNQAEEEFDGFGDLFNEPEATSYLNTETNAEEDTDITLWIQNIQESSLEELDDTNTLVSINSCLALFTKPEILSDEQAWYCEHCSKMLKKTREHEVSKLQATNLHVTVRPKMDEDEIPSKKDVASFHEDSASTKVLDNWRINAFQKLASQAEYSLNNGDSNRNDTLETAFCTNMTSCPDVLDRDMSESETSQYFSTSTCVNSRAQDCSTNEESNFHGINDHSIENDGKKTEFDSHYLRSHTNKCVHMPCEDRSQAVNRVRKKGIKPDNAYPDRDNKGEGIKMVKRVATKRILINRVPPILTIHLKRFSQDTRGHLTKLSGHVSFQETLDLKSYMDPRCIEDRTLYHLTGVIEHMGSMGGGHYVSYTRGEGRGDSSSSSSCCTGQSWFYASDAYVKEVSLAEVLRSEAYILFYEKM

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0016579	Biological Process	protein deubiquitination
GO:0008270	Molecular Function	zinc ion binding
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.320
SRP064423	SRR2545915	Juvenile tuber	17.810
SRP108465	SRR5643513	five period of Gastrodia elata	9.250
	SRR5643514	five period of Gastrodia elata	10.980
	SRR5643515	five period of Gastrodia elata	9.440
	SRR5643524	five period of Gastrodia elata	11.020
	SRR5643525	five period of Gastrodia elata	9.850
	SRR5643528	five period of Gastrodia elata	7.900
	SRR5643658	five period of Gastrodia elata	7.900
	SRR5643659	five period of Gastrodia elata	11.830
	SRR5643660	five period of Gastrodia elata	11.970
	SRR5643661	five period of Gastrodia elata	10.610
	SRR5643662	five period of Gastrodia elata	10.760
	SRR5643663	five period of Gastrodia elata	11.690
	SRR5643664	five period of Gastrodia elata	10.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.240
SRP279888	Gastro	Gastrodia elata tuber	12.36
	Juven	Juvenile tuber	9.33
	Mother_Gastro	Mother tuber of Gastrodia elata	9.90
	Mother_Juven	Mother tuber of Juvenile	7.64