Detail information of GWHGAAEX009482/evm.TU.scaffold_25.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-26RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01187.00E-42FOG: RRM domain
nrgi|672141631|ref|XP_008794650.1|3.19E-50PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q9SVM8|RBG2_ARATH2.00E-42Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBLtr|P93486|P93486_PEA1.00E-46Glycine-rich RNA-binding protein PsGRBP {ECO:0000313|EMBL:AAB71417.1}
TAIRAT4G138507.00E-42glycine-rich RNA-binding protein 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003023923912393310-
Transcript Sequence

Network for GWHGAAEX009482

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1401101.80E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.170
SRR2545915Juvenile tuber60.400
SRP108465SRR5643513five period of Gastrodia elata77.420
SRR5643514five period of Gastrodia elata78.850
SRR5643515five period of Gastrodia elata79.460
SRR5643524five period of Gastrodia elata68.050
SRR5643525five period of Gastrodia elata35.560
SRR5643528five period of Gastrodia elata36.320
SRR5643658five period of Gastrodia elata30.670
SRR5643659five period of Gastrodia elata103.550
SRR5643660five period of Gastrodia elata117.540
SRR5643661five period of Gastrodia elata108.180
SRR5643662five period of Gastrodia elata111.750
SRR5643663five period of Gastrodia elata103.020
SRR5643664five period of Gastrodia elata101.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_192.170
SRR6049655Rhizomagastrodiae_C368-T10_good_141.750
SRR6049656Rhizomagastrodiae_C368-T07_good_193.700
SRR6049657Rhizomagastrodiae_C368-T07_good_198.240
SRR6049658Rhizomagastrodiae_C368-T04_good_176.970
SRR6049659Rhizomagastrodiae_C368-T04_good_163.260
SRR6049660Rhizomagastrodiae_C368-T01_good_167.250
SRR6049661Rhizomagastrodiae_C368-T04_good_171.180
SRR6049662Rhizomagastrodiae_C368-T01_good_190.780
SRR6049663Rhizomagastrodiae_C368-T01_good_173.850
SRR6049664Rhizomagastrodiae_C368-T10_good_1124.760
SRR6049665Rhizomagastrodiae_C368-T10_good_1124.760
SRP279888GastroGastrodia elata tuber 125.20
JuvenJuvenile tuber100.16
Mother_GastroMother tuber of Gastrodia elata 32.75
Mother_JuvenMother tuber of Juvenile 42.55