Detail information of GWHGAAEX009485/evm.TU.scaffold_25.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 2.00E-140 | CCCH-type Zn-finger protein |
| nr | gi|672184029|ref|XP_008812314.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SWF9|ZFNL_PEA | 1.00E-179 | Zinc finger CCCH domain-containing protein ZFN-like |
| trEMBL | tr|B9RFV8|B9RFV8_RICCO | 0 | Nucleic acid binding protein, putative {ECO:0000313|EMBL:EEF50079.1} |
| TAIR | AT3G02830 | 2.00E-140 | zinc finger protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 2503430 | 2556297 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009485
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 60 | 85 | 1.10E-08 |
| PF00642.23 | zf-CCCH | 104 | 128 | 7.90E-10 |
| PF00642.23 | zf-CCCH | 150 | 174 | 5.40E-06 |
| PF00642.23 | zf-CCCH | 308 | 333 | 4.30E-07 |
| PF00642.23 | zf-CCCH | 354 | 378 | 3.10E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.570 |
| SRR2545915 | Juvenile tuber | 50.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.660 |
| SRR5643514 | five period of Gastrodia elata | 58.140 | |
| SRR5643515 | five period of Gastrodia elata | 59.160 | |
| SRR5643524 | five period of Gastrodia elata | 65.380 | |
| SRR5643525 | five period of Gastrodia elata | 94.830 | |
| SRR5643528 | five period of Gastrodia elata | 105.520 | |
| SRR5643658 | five period of Gastrodia elata | 107.990 | |
| SRR5643659 | five period of Gastrodia elata | 41.130 | |
| SRR5643660 | five period of Gastrodia elata | 38.900 | |
| SRR5643661 | five period of Gastrodia elata | 44.630 | |
| SRR5643662 | five period of Gastrodia elata | 36.240 | |
| SRR5643663 | five period of Gastrodia elata | 37.170 | |
| SRR5643664 | five period of Gastrodia elata | 33.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 93.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 62.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 62.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 69.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 66.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.78 |
| Juven | Juvenile tuber | 71.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 140.02 | |
| Mother_Juven | Mother tuber of Juvenile | 138.04 |