Gene detail

Detail information of GWHGAAEX009494/evm.TU.scaffold_25.85

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|18978215\|ref\|NP_579572.1\|	3.00E-78	chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
KOG	KOG0933	0	Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E)
nr	gi\|672162340\|ref\|XP_008800994.1\|	0	PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 2-1-like [Phoenix dactylifera]
Swissprot	tr\|Q9C5Y4\|SMC21_ARATH	0	Structural maintenance of chromosomes protein 2-1
trEMBL	tr\|F6HAI6\|F6HAI6_VITVI	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}
TAIR	AT5G62410	0	structural maintenance of chromosomes 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	2770658	2800726	+

Transcript Sequence
>GWHTAAEX009494 CGCCCCTATTTCGAAAACTTTATTGAGCTCACTCCTGCGCCTTCTCCTTCTGATTTCTGACCATTTTCTAGGGTTCGTTCAATACGATTTCCCGAACAACCTTCTTCTTTCCATCTACATCAATTACTGAACTATTCTTACTCGCCATTTCCGGCGACGATGCACATCAAAGAGATCTCTTTGGAGGGCTTCAAATCGTACGCGACCAGAACTGTTGTCTCTGGCTTCGACCCCTTTTTCAACGCCATCACTGGATTAAACGGTTCCGGAAAGTCTAACATACTCGATTCAATCTGCTTCGTTCTTGGAATCACCAACCTCCAGCAAGTACGCGCTACAAATCTTCAGGAGCTCGTCTACAAGCAGGGACAGGCAGGCATCACCAAGGCTACGGTCTCCATTATCTTCGATAACTCTGACCGAAATCGAAGCCCTTTGGGATACGAGGGCTGCCCCGAAATTACTGTCACAAGGCAGATTGTAGTTGGTGGAAGAAACAAATACCTTATTAACGGGCATCTTGCTCAGCCCTCTAGAGTGCAGACACTCTTTCACTCCATACAACTCAATGTCAATAATCCACATTTTCTCATAATGCAAGGGCGCATAACTAAAGTGCTCAATATGAAACCACCTGAAATTCTATCCATGCTTGAAGAGGCTGCTGGCACAAAAATGTATGAGTTGAAAAAAGAATCTGCTTTAAAAACTCTTGAGAAAAAACAAAGCAAATTGGATGATATGGATAAACTACTCGACCAGGAAATCGTTCCTTCACTTGAGAAACTCAGAAAGGAGAGGATGCAGTACATGCAGTGGGTTAATGGCAATGCCGAATTAGATCGTCTTAAAAGGTTCTGCATTGCTTTTGAATATGTTCAGGCAGAAGAAGTGAGAGATAGTGCGATTCATGGAGCTGCACAGATCATGGCTAAAACAACTGAACTAGATGACAGAGCAGAAAAAACAAGAAAACAGATACAAGAGATGGAGAGTAACATTTGTACATTGATATCTGATAAAGAAGCAAAATTAGGTGGTGATGTGAAGAAGCTGTCATTGAATGTTGATGAACTTTCTCGATCTTTGGTGAAGGAGACTTCAATAATGTCTAATCAGGAGGAATCGTTGAGATCAGAAAAAAATGCTGCGAAGAAGATTGAAATGAGTATTGACGATCTCAAAAGATTAATAATTGAAAAGGATTCAACTATAAATAAAGTTGAGGATGGGGCTGCTGATCTTAAGAAAAAAGTTGAAGAGTTATCAAAAAACTTGCATGATAGTGAAAATGAGTACCAGGGAGTGCTAGCTGGCAAAAGCAACATAAATGAAGAAAAATGCTTGGAAGATCAGCTAAGGGATGCAAAAGCTGCTGTTGGAAATTGTGAAACTGAATTGAAGCAATTAAAAACCAAATTAAGTCATTCAGAGAAAGAACTTAAAGCAAAAAGTGCACAGTTGATGTCAAAACGTGATGAGGCTGCTGCTGTAGAAAAAGAGCTTAATGATCGAAAGAAAAATATCGAGAGCATCAAATCTGCAATGGAATCACTTGGATGTGAGGAAGGAGAGATGGAGGCTCTTCAAAAGGATCGTTCTGTAGAGCTTGAGGCTGTTCAGAGGCTGAAAGACAGTATTCGTATTATATCTGGCCAACTTGCAAACATCCAGTTCAGCTACCATGATCCTGTAAAAGACTTTGATAGGTCCAAGGTCAAGGGAGTCGTTGCAAGATTAGTTACAGTGAAGGACATGTCTACCATGACTGCTTTAGAGGTGACTGCTGGAGGCAAGCTATTTAATGTTGTTGTGGACACTGAAAACACCGGGAAGCAACTGCTCCAAAATGGTGATCTTCGGAGAAGAGTAACAATTATACCATTAAACAAGATCCAGTCTCATATTGTTCCTGCAAGGGTTAAACAATCTGCTGTCAGATTGGTTGGTGAGCATAATGTTGAACTGGCCCTTTGCTTGATTGAATATAATGATGAAGTGAAGAATGCCATGGCTTATGTGTTTGGTTCAACATTTGTTTGTCAAAGTGCTAATGCAGCTAAAGAGATTGCCTTTAATCGGGATATTGGCACCACAAGCGTGACTCTTGAAGGTGACATTTTTCAACCTAGTGGACTTCTAACTGGTGGCAGCCGCAGGGGTGGTGGTGAGCTCTTAAGGCAGCTTCATGATTTAGCTGAAAAAGAATCTGAGCTTTCTGTTCATCAGAATAGGCTGTCCGATATTGATGACAAGATCTCCAAGCTCATGCCTCTCCACACAAAATTCATGCATTATAAATCACAATTGGATCTCAAGTCATATGATCTTTCACTCTTTCAGAGTAGAGCTGAACAGAATGAGCACCACAAGCTAGGTGAAATGGTTAGAAAACTTGAACAAGAGATTGAAGAAACACAGTTATGTGTAGAACAAAAGCAACTTCTGCTAAAAAGCAATGTTTCTAATGTTCGAGAACTTGAAATTTTGATCAAGGAGCGCACCAAAAATCGTGAGGGCATGCTTAAGGAACTTGACAAAAGAATAAAGGCCATAAAAGCTAATTTACAGTCTGCTTCAAAGCTAATGAAGAGTCATGAAAGCGAAAATGAAAAGCTTATTATGGAAAAAGATTCGATTATCCAAGAGCTTACCTCGTTGGAAACCCAATTATCTTACTCAAATAAGCAAATCGTTGTTCTCAATGAAGCACTGGATAAACAAAAATCAGTGGTCAGTTCTGTAAAAAAGGAACACATTCGAGCTGAAACTGAGTTGCAACTGATTCAGTCAAGGATGAAAGAGTGCGATAGCCAGATAAACAAGATTTCAAAAGAGCAACAGAACCTTCAGCAACAACTAAGTGATTCCATTTTAGAAAGGAAGAAACTAGAAAATGAGGCAAAACGCATGGATTTGGAACAAAAAGATTGTTCTGCAAGGGTTGAAAAATTGCTTGAAAAGCATGGATGGATTTCATCTGAGAAGCAACTATTTGGTAAAAGTGGAACCGATTATGATTTCTCCTTGCGTAACTTTAACAACGCCAGGGAAGAGTATGAAAGGCTGCAATCTGAGCAGTCCAGTCTTGAGAAGAGGATTAATAAAAAGGTTATTGCAATGTTTGAGAAAGCCGAAGAAGAGTACAACTCTTTAATTTTGAAGAAGAATATAATTGAGAATGATAAAGCTAAGATTAAGAAAGTTATTGAAGAGCTAGATGAAAAAAAGAAGGAAACTCTTAAAGTAACCTGGGTCAAAGTGAACAAGGATTTTGGGTCTATCTTCAGTACACTTTTGCCTGGAACTATGTCTAAGCTTCAACCTTCAGAGGGATGCAGTTTTCTAGATGGCCTTGAAGTTCGTGTTGCTTTTGGTAGTGTTTGGAAGCAGTCCCTTTCTGAATTGAGTGGAGGCCAGCGATCTCTTCTTGCACTTTCGCTTATACTAGCCTTGCTCCTTTACAAGCCTGCTCCACTCTATATACTGGACGAGGTGGATGCTGCTCTTGATTTAAGCCACACTCAGAATATTGGAAGAATGATTAAAGCTCATTTTCCTCATTCTCAGTTTATCGTTGTTTCTTTAAAGGAGGGAATGTTCAACAATGCCAACGTTCTATTTCGGACAAAATTTGTAGATGGAGTTTCAACGGTTACAAGAACTGTTGCCTCAAAGCAGACATAAAAGTCTAGAAAGAAATTTATTTATTTACTTACTCTTAGTCTGTTTTGTAGTTTGATACATTTTAGATATTTTATGTATTTATTCCCATCAACTTGTAAAAGTTGGATGGAACAAATCGGCACAGTATATTCGCTATAATGATAGAAAAACGAGGTTTTGTTTCATTGTATATGGTTTGAAGAAGTTTTTTTTTTTTT

Network for GWHGAAEX009494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.18	SMC_N	2	1161	2.40E-58
PF06470.12	SMC_hinge	518	638	1.80E-20

Protein Sequence

>GWHPAAEX009494
MHIKEISLEGFKSYATRTVVSGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRATNLQELVYKQGQAGITKATVSIIFDNSDRNRSPLGYEGCPEITVTRQIVVGGRNKYLINGHLAQPSRVQTLFHSIQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTKMYELKKESALKTLEKKQSKLDDMDKLLDQEIVPSLEKLRKERMQYMQWVNGNAELDRLKRFCIAFEYVQAEEVRDSAIHGAAQIMAKTTELDDRAEKTRKQIQEMESNICTLISDKEAKLGGDVKKLSLNVDELSRSLVKETSIMSNQEESLRSEKNAAKKIEMSIDDLKRLIIEKDSTINKVEDGAADLKKKVEELSKNLHDSENEYQGVLAGKSNINEEKCLEDQLRDAKAAVGNCETELKQLKTKLSHSEKELKAKSAQLMSKRDEAAAVEKELNDRKKNIESIKSAMESLGCEEGEMEALQKDRSVELEAVQRLKDSIRIISGQLANIQFSYHDPVKDFDRSKVKGVVARLVTVKDMSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHIVPARVKQSAVRLVGEHNVELALCLIEYNDEVKNAMAYVFGSTFVCQSANAAKEIAFNRDIGTTSVTLEGDIFQPSGLLTGGSRRGGGELLRQLHDLAEKESELSVHQNRLSDIDDKISKLMPLHTKFMHYKSQLDLKSYDLSLFQSRAEQNEHHKLGEMVRKLEQEIEETQLCVEQKQLLLKSNVSNVRELEILIKERTKNREGMLKELDKRIKAIKANLQSASKLMKSHESENEKLIMEKDSIIQELTSLETQLSYSNKQIVVLNEALDKQKSVVSSVKKEHIRAETELQLIQSRMKECDSQINKISKEQQNLQQQLSDSILERKKLENEAKRMDLEQKDCSARVEKLLEKHGWISSEKQLFGKSGTDYDFSLRNFNNAREEYERLQSEQSSLEKRINKKVIAMFEKAEEEYNSLILKKNIIENDKAKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPGTMSKLQPSEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLYKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVTRTVASKQT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06674	SMC2	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0051276	Biological Process	chromosome organization
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0005694	Cellular Component	chromosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.880
SRP064423	SRR2545915	Juvenile tuber	4.990
SRP108465	SRR5643513	five period of Gastrodia elata	2.290
	SRR5643514	five period of Gastrodia elata	3.790
	SRR5643515	five period of Gastrodia elata	1.750
	SRR5643524	five period of Gastrodia elata	2.470
	SRR5643525	five period of Gastrodia elata	2.210
	SRR5643528	five period of Gastrodia elata	1.350
	SRR5643658	five period of Gastrodia elata	2.000
	SRR5643659	five period of Gastrodia elata	2.670
	SRR5643660	five period of Gastrodia elata	3.410
	SRR5643661	five period of Gastrodia elata	3.090
	SRR5643662	five period of Gastrodia elata	1.950
	SRR5643663	five period of Gastrodia elata	2.880
	SRR5643664	five period of Gastrodia elata	2.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.310
SRP279888	Gastro	Gastrodia elata tuber	3.08
	Juven	Juvenile tuber	2.81
	Mother_Gastro	Mother tuber of Gastrodia elata	2.26
	Mother_Juven	Mother tuber of Juvenile	2.01