Detail information of GWHGAAEX009498/evm.TU.scaffold_25.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15679637|ref|NP_276754.1| | 3.00E-37 | cell division protein [Methanothermobacter thermautotrophicus str. Delta H] |
| KOG | KOG2869 | 0 | Meiotic cell division protein Pelota/DOM34 |
| nr | gi|743806156|ref|XP_010927613.1| | 0 | PREDICTED: protein PELOTA 1 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZT87|PEL1_ARATH | 0 | Protein PELOTA 1 |
| trEMBL | tr|M0TN32|M0TN32_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P06290_001} |
| TAIR | AT4G27650 | 0 | Eukaryotic release factor 1 (eRF1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 2953492 | 2988380 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009498
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03463.14 | eRF1_1 | 1 | 129 | 7.70E-55 |
| PF03464.14 | eRF1_2 | 137 | 268 | 6.40E-26 |
| PF03465.14 | eRF1_3 | 272 | 370 | 6.00E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06965 | PELO, DOM34, pelA | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071025 | Biological Process | RNA surveillance |
| GO:0070481 | Biological Process | nuclear-transcribed mRNA catabolic process, non-stop decay |
| GO:0070966 | Biological Process | nuclear-transcribed mRNA catabolic process, no-go decay |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.190 |
| SRR2545915 | Juvenile tuber | 55.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.900 |
| SRR5643514 | five period of Gastrodia elata | 32.320 | |
| SRR5643515 | five period of Gastrodia elata | 33.890 | |
| SRR5643524 | five period of Gastrodia elata | 30.960 | |
| SRR5643525 | five period of Gastrodia elata | 40.100 | |
| SRR5643528 | five period of Gastrodia elata | 37.980 | |
| SRR5643658 | five period of Gastrodia elata | 54.070 | |
| SRR5643659 | five period of Gastrodia elata | 32.690 | |
| SRR5643660 | five period of Gastrodia elata | 36.610 | |
| SRR5643661 | five period of Gastrodia elata | 32.940 | |
| SRR5643662 | five period of Gastrodia elata | 34.680 | |
| SRR5643663 | five period of Gastrodia elata | 36.670 | |
| SRR5643664 | five period of Gastrodia elata | 39.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.25 |
| Juven | Juvenile tuber | 61.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.25 | |
| Mother_Juven | Mother tuber of Juvenile | 67.35 |