Gene detail

Detail information of GWHGAAEX009502/evm.TU.scaffold_25.95_evm.TU.scaffold_25.96

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1991	Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily)
nr	gi\|743879465\|ref\|XP_010908411.1\|	PREDICTED: probable importin-7 homolog [Elaeis guineensis]
Swissprot	tr\|F4IRR2\|SAD2_ARATH	Importin beta-like SAD2 {ECO:0000305}
trEMBL	tr\|A0A068VG83\|A0A068VG83_COFCA	Coffea canephora
TAIR	AT3G59020	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	3022550	3068099	-

Transcript Sequence
>GWHTAAEX009502 GGCGACTTGGGGATATCGCTCAGTAGTACGACCTCACGAGCCCATACCCAGACCGGACTCCGGACGCAGTTTTAAAGCCGGTTGCACTTTTGCAGCCGGCCCGACCGGGAAAGGATAAACTGCGCAAACAGAAGCCGTAGATAACCTAACCCTAGGATTAAATATCCACCACTCCTCTCCCTCGTTCTCTCTGCCCACGTTCTGGGAGCAAATTTTCCTCAGCTTCAACACCCATCCCTCTGCTGATCTCTCCACGTCTTTACATCGTGGAGAAGCAAAAGAAGAAACCCTAGAATTGCTTCTTGGTTCCGATTCCTTCTCCTGATCGCCAGCTAGAGCGTTGTTTTTTCACATTCTCCGCGGCCATGGACCTACCGAACCTCGTTGTCATTCTCCAGGCCGCGCTAAGCCCCAATCCAGTCGAGCGGAAAGCAGCAGAGGAGAGCCTCAACCAGTTTCAGCACACACCTCAGCATTTGGTGAGGTTGCTGCAGATCATAGTGGATGGGAATTGTGATTTGGCAGTGCGTCAAGCTGCCAGTATTCATTTCAAAAATTTTGTGGCTAAGAATTGGTCACCTGATGAGCCTGGTGGGCCCCAAATGATCTCGGCCAGTGATAAAGGTGTGGTCAGGGAGAATATTCTTGGTTTTATTATTCAACTTCCTCAATTACTGAGAGTGCAACTTGGCGAATGCCTTAAGACAATAATTCATGCTGATTACCCTGAACAGTGGCCAACTCTTCTTCACTGGATTAAGTGCAACTTACAGTTGCAAGACCAAATATTTGGAGCTCTATATGTTTTAAGGGTTCTTTCAAGGAAATATGAGTTCAAATCTGATGAAGAGCGATTACCTGTCTATCACATTGTGGAAGAGACTTTTCCTCACCTTCTCAACATATTTCATAAACTCATTCAGATCACTAATCCTCCTATAGAAGTTGCAGACTTGATCAAGCTTATTTGCAAAATATTTTGGTCATCAATATATCTAGAGATACCAAAGCAGCTTTATGATCCCAATGTATTTAATGCGTGGATGTTGCATTTCTTGAACATTTTAGAAAGGCCCGTTCCTTTAGAAGGTCAACCAACTGATCCCGAGCTCAGGAAATTTTGGGGTTGGTGGAAAGTTAAAAAATGGACCGTTCACATTTTGAATCGTCTATACACTAGGTTTGGGGACATGAAACTTCAGAATCCAGAAAATAAAGCTTTTGCTCAAATGTTTCAGAAAAATTATGCTGGAAAAATTCTTGAATGCCATCTACGCTTGCTTAATGCTATTAGGACTGGTGAATACCTACCTGATAGGGTTATAAACCTTGTTCTTCAGTATCTTAATTGCAGTATTTCCAGAAGTAGTATGTATCAGCTGCTGCAACCACAATTGGATATTGTTCTTTTTGAGATTATTTTTCCGTTAATGTGTTTTAATGACAATGATCAGAGATTATGGAATGAAGACCCTCACGAATATGTTAGGAAAGGATATGATATCATTGAAGATCTGTACAGTCCAAGAACTGCTGCTATGGACTTTGTAAGCGAATTGGTGAGAAAACGTGGAAAGGGGAACCTTCAGAAGTTTGTTCAGTTCATCGTTGAGATATTAAGGAGATATGATGAGGCAAGTATTGATTCAAAACCATATCGACAAAAAGATGGCGCTCTTCTAGCCATTGGAACATTATGTGATAAATTAAAGCAAACTGAGCCTTATAAGTCTGAGCTTGAGCGTATGTTGGTGCAGCATGTGTTCCCTGAATTTACAAGTCCTGTTGGGTATCTTAGAGCTAAGGCAGCTTGGGTTGCAGGCCAATATGCATACACTAATTTCTTGGACCAGAACAATTTTCGTAGAGCGTTGCACTGTATTGTTTCTGGTTTGAAGGATTCAGAGCTTCCTGTTCGTGTTGATTCTATCTTTGCATTACGTCCTTTCGTTGAAGCTTGCAAAGATTTAGATGAGCTTCGTCCCATGCTTCCACAATTACTCGATGATTTTTTCAAGCTTATGAATGAGGTTGAGAATGAGGATCTTGTTTTTACTCTTGAAACTATTGTTGATAAATTTGGTGAAGAGATGGCTCCATATGCTCTTGGATTATGCCAAAATTTGGCTGCTGCATTTTGGAGGTGCTTGAATGCATCTGAAGCGGATGATGAAGGGGATGACTCAGGTGCTCTTGCTGCTGTTGGCTGCTTGCGTGCAATAAGCACAATTCTGGAATCTGTGAGCAGACTTACACATCTTTATGTTCAAATAGAGCCTACATTATTACCTATTATGCGAAAAATGCTGACTACAGATGGACAAGATGTTTTTGAGGAGGTCTTAGAAATGGTTTCCTACATGACATTTTATTCCCCATCAATTTCTCTGGATATGTGGTCACTTTGGCCTCTTATGACTGAAGCTCTCAACGACTGGGCTATTGATTACTTTGATAATATTCTTATTCCGCTGGACAACTACATATCCAGAGGCACTGCCCATTTTCTAAAATGCAAAGAGCCTGATTATCAGCAGAGCCTTTGGAATATGCTTTCTTCTGTTATGGCAGACAAAAATATTGAGGATAATGATATTCAGCCAGCACCAAAACTTATCCAAGTAGTACTACAGAATTGCAAAGGACAGGTAGATCATTGGGTTGAGCCATATCTTCTGATCACGATTGAACGCCTTCGACGAACAGAGAAGTCATCCTTGAGATGTCTATTAATCTCAGTGATTGCTGATTCCCTGTATTACAATTCTTCGTTGAGTCTTGGAATATTGCATAAGGTTGGTGTTGCTTCTGAAATTTTCAATCTTTGGTTTCAAATGCTACAAGAAGTTAGGAAGAGTGGTGTACGTGCAAATTTTAGACGAGAATATGACAAGAAGGTATGCTGCTTGGGGCTAACTTCACTTATTGCACTTTCCGAGGAACAACTGCCAACAGATGCTTTACAACGCGTTTTTTGTGCTACTCTGGAACTACTTGCATCTTATAAAGATCAAGTTGCAGAAGCTAGGAAGGAAGCTGAAGTTGAAGATGATGAAATGGATGGCTTCCAAACTGATGATGATGAAGATGACGAGTCTGACAGAGAAATGGGTGATGATGATGATGAGGATGGAGATGAGGCAGACAGCCGAAAGTTAAAAAAATTAGCTGCACAGGCAAAGGGTTTACAACCTGAGGACGAGGATGATGCAGATTCGGATGATGATTTGAGTGACGATGAAGAGATGCAGTCACCTATTGATGATGTGGACCCATTCATTTTCTTTATGGAAACAGTGAAAGGTTTGCAAGCGACGAACCCTGCAAGATTACAGAATGTGATGCAGACAATGGACTTTAGCCATCAGGCTCTCGCCAATGGAATAGCTCAGCATGCTGAGCAGAGGAAGGTAGAGATTGAGAAGGAGAGGACGGAGAAGACGGCGGCATTATCATGATGCCAAGGGAGAGAATAAAAGGAAGGGAATGAATGCTTCCTTAATATATATTCATCCAGAATTTATCAATTTATAAATTCTTCCGCGCCTGTTGCCGTGTGGGTTTGTGGCCCTTTCATTTCCTTGGCCTCTTTCTCCTGAAGAAGCGGTGTATCTTCTTCTCGCACAGCCAAAGGTCCGTCTGTTATTTTCCCTCTCTGAAATTGGGCGGGAA

Network for GWHGAAEX009502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	24	99	4.40E-19
PF08506.9	Cse1	154	448	4.10E-09

Protein Sequence

>GWHPAAEX009502
MDLPNLVVILQAALSPNPVERKAAEESLNQFQHTPQHLVRLLQIIVDGNCDLAVRQAASIHFKNFVAKNWSPDEPGGPQMISASDKGVVRENILGFIIQLPQLLRVQLGECLKTIIHADYPEQWPTLLHWIKCNLQLQDQIFGALYVLRVLSRKYEFKSDEERLPVYHIVEETFPHLLNIFHKLIQITNPPIEVADLIKLICKIFWSSIYLEIPKQLYDPNVFNAWMLHFLNILERPVPLEGQPTDPELRKFWGWWKVKKWTVHILNRLYTRFGDMKLQNPENKAFAQMFQKNYAGKILECHLRLLNAIRTGEYLPDRVINLVLQYLNCSISRSSMYQLLQPQLDIVLFEIIFPLMCFNDNDQRLWNEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKGNLQKFVQFIVEILRRYDEASIDSKPYRQKDGALLAIGTLCDKLKQTEPYKSELERMLVQHVFPEFTSPVGYLRAKAAWVAGQYAYTNFLDQNNFRRALHCIVSGLKDSELPVRVDSIFALRPFVEACKDLDELRPMLPQLLDDFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCLNASEADDEGDDSGALAAVGCLRAISTILESVSRLTHLYVQIEPTLLPIMRKMLTTDGQDVFEEVLEMVSYMTFYSPSISLDMWSLWPLMTEALNDWAIDYFDNILIPLDNYISRGTAHFLKCKEPDYQQSLWNMLSSVMADKNIEDNDIQPAPKLIQVVLQNCKGQVDHWVEPYLLITIERLRRTEKSSLRCLLISVIADSLYYNSSLSLGILHKVGVASEIFNLWFQMLQEVRKSGVRANFRREYDKKVCCLGLTSLIALSEEQLPTDALQRVFCATLELLASYKDQVAEARKEAEVEDDEMDGFQTDDDEDDESDREMGDDDDEDGDEADSRKLKKLAAQAKGLQPEDEDDADSDDDLSDDEEMQSPIDDVDPFIFFMETVKGLQATNPARLQNVMQTMDFSHQALANGIAQHAEQRKVEIEKERTEKTAALS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20223	IPO7, RANBP7	MAPK signaling pathway - fly	map04013

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.660
SRP064423	SRR2545915	Juvenile tuber	73.990
SRP108465	SRR5643513	five period of Gastrodia elata	43.900
	SRR5643514	five period of Gastrodia elata	40.610
	SRR5643515	five period of Gastrodia elata	42.370
	SRR5643524	five period of Gastrodia elata	35.970
	SRR5643525	five period of Gastrodia elata	43.570
	SRR5643528	five period of Gastrodia elata	39.400
	SRR5643658	five period of Gastrodia elata	44.040
	SRR5643659	five period of Gastrodia elata	69.500
	SRR5643660	five period of Gastrodia elata	69.740
	SRR5643661	five period of Gastrodia elata	73.480
	SRR5643662	five period of Gastrodia elata	76.700
	SRR5643663	five period of Gastrodia elata	70.190
	SRR5643664	five period of Gastrodia elata	78.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.010
SRP279888	Gastro	Gastrodia elata tuber	72.57
	Juven	Juvenile tuber	54.25
	Mother_Gastro	Mother tuber of Gastrodia elata	36.97
	Mother_Juven	Mother tuber of Juvenile	42.18