Detail information of GWHGAAEX009503/evm.TU.scaffold_25.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16096.00E-25Protein involved in mRNA turnover and stability
nrgi|695009723|ref|XP_009391507.1|1.46E-53PREDICTED: uncharacterized protein LOC103977658 [Musa acuminata subsp. malaccensis]
Swissprottr|F4JKK0|SUD1_ARATH4.00E-08Probable E3 ubiquitin ligase SUD1
trEMBLtr|M0SCU6|M0SCU6_MUSAM1.00E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P08290_001}
TAIRAT5G380706.00E-25RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003030836233086539+
Transcript Sequence

Network for GWHGAAEX009503

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv29784.60E-13
PF12428.7DUF3675911971.00E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.270
SRR2545915Juvenile tuber2.150
SRP108465SRR5643513five period of Gastrodia elata12.360
SRR5643514five period of Gastrodia elata19.080
SRR5643515five period of Gastrodia elata12.450
SRR5643524five period of Gastrodia elata12.770
SRR5643525five period of Gastrodia elata25.090
SRR5643528five period of Gastrodia elata12.410
SRR5643658five period of Gastrodia elata18.340
SRR5643659five period of Gastrodia elata1.950
SRR5643660five period of Gastrodia elata0.830
SRR5643661five period of Gastrodia elata1.470
SRR5643662five period of Gastrodia elata1.100
SRR5643663five period of Gastrodia elata1.210
SRR5643664five period of Gastrodia elata4.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.750
SRR6049655Rhizomagastrodiae_C368-T10_good_180.570
SRR6049656Rhizomagastrodiae_C368-T07_good_128.600
SRR6049657Rhizomagastrodiae_C368-T07_good_112.800
SRR6049658Rhizomagastrodiae_C368-T04_good_122.400
SRR6049659Rhizomagastrodiae_C368-T04_good_119.490
SRR6049660Rhizomagastrodiae_C368-T01_good_114.820
SRR6049661Rhizomagastrodiae_C368-T04_good_114.340
SRR6049662Rhizomagastrodiae_C368-T01_good_123.940
SRR6049663Rhizomagastrodiae_C368-T01_good_121.240
SRR6049664Rhizomagastrodiae_C368-T10_good_172.990
SRR6049665Rhizomagastrodiae_C368-T10_good_172.990
SRP279888GastroGastrodia elata tuber 2.02
JuvenJuvenile tuber4.25
Mother_GastroMother tuber of Gastrodia elata 3.46
Mother_JuvenMother tuber of Juvenile 2.47