Detail information of GWHGAAEX009504/evm.TU.scaffold_25.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743783860|ref|XP_010921506.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q3EAF8|PP294_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g62540, mitochondrial (Precursor) |
| trEMBL | tr|M0U0W5|M0U0W5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P16580_001} |
| TAIR | AT3G62540 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3090272 | 3092453 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009504
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 192 | 221 | 0.0085 |
| PF01535.19 | PPR | 261 | 286 | 9.30E-06 |
| PF13041.5 | PPR_2 | 291 | 339 | 4.80E-12 |
| PF13041.5 | PPR_2 | 369 | 408 | 2.50E-10 |
| PF13812.5 | PPR_3 | 419 | 478 | 2.00E-11 |
| PF01535.19 | PPR | 505 | 533 | 4.30E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.360 |
| SRR2545915 | Juvenile tuber | 6.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.610 |
| SRR5643514 | five period of Gastrodia elata | 9.830 | |
| SRR5643515 | five period of Gastrodia elata | 11.790 | |
| SRR5643524 | five period of Gastrodia elata | 11.020 | |
| SRR5643525 | five period of Gastrodia elata | 15.110 | |
| SRR5643528 | five period of Gastrodia elata | 18.120 | |
| SRR5643658 | five period of Gastrodia elata | 11.740 | |
| SRR5643659 | five period of Gastrodia elata | 14.110 | |
| SRR5643660 | five period of Gastrodia elata | 12.660 | |
| SRR5643661 | five period of Gastrodia elata | 15.630 | |
| SRR5643662 | five period of Gastrodia elata | 14.660 | |
| SRR5643663 | five period of Gastrodia elata | 13.550 | |
| SRR5643664 | five period of Gastrodia elata | 9.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.58 |
| Juven | Juvenile tuber | 9.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.24 | |
| Mother_Juven | Mother tuber of Juvenile | 7.25 |