Gene detail

Detail information of GWHGAAEX009506/evm.TU.scaffold_25.101

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|117928413\|ref\|YP_872964.1\|	5.00E-105	DSH domain-containing protein [Acidothermus cellulolyticus 11B]
KOG	KOG0948	0	Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily
nr	gi\|743872673\|ref\|XP_010906612.1\|	0	PREDICTED: superkiller viralicidic activity 2-like 2 [Elaeis guineensis]
Swissprot	tr\|B9DFG3\|ISE2_ARATH	9.00E-73	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBL	tr\|K3XV14\|K3XV14_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si005771m}
TAIR	AT1G59760	0	RNA helicase, ATP-dependent, SK12/DOB1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	3195958	3229919	+

Transcript Sequence
>GWHTAAEX009506 CTAGGGTTTTGTGTCTTCCAAGATCTTTCTTCCAGTCTTATTATCTTAAGCGGTCTAAAGTCAGGGGAACCTGAACTTGGCTTTTGCTTCAACTATAATCCCTTCGAGCTCCTTTCCATTTTCAGCCTGCTAATCCAGTCAATAACATCCTCTTGTAAAAATCCCTTCTTTTTTCAGCGATGTCTTTATTGATGAAGAGAAACTCCATTGACGGTTCCTTTCCAGCAACTCCCATGCCACATAAATTGCAGAAAACCGACGATCAAATCTTAATCAATGAACCTGTGGCCTGCCTTCACGATGTCTCCTACCCAGAGGGTTATGCCATCTCGCGGTCGGGGCTGCCCCGCTCCACGGGCGGTACTAGAAAGCCAGCGAAGGAGTTTCCCTTCGAACTCGATCCCTTCCAGTCCGAAGCAATTAGATGCATTGAAAATGGGGAATCCGTCATGGTATCTGCGCATACATCAGCTGGAAAAACTGTTGTTGCCTTATATGCTATTGCCATGTCATTGAGAAACCAACAACGGGTTGTTTACACCTCTCCAATCAAGGCTCTCAGCAATCAGAAATACAGGGAGTTTAAAGAGGAGTTTTCAGATGTTGGCCTCATGACTGGAGACGTGACCATTGAGCCCAACGCCTCTTGCCTGGTAATGACTACTGAGATTTGGAGGAGCATGCAGTACAAAGGTTCAGAGATACTACGTGAGGTAGCCTGGATCATTTTTGATGAAGTGCATTATATGCGTGATAGGGAAAGAGGTGTTGTGTGGGAAGAAAGTATTGTTATGGCTCCTATGAACTCTCGATTTGTTTTCCTCTCTGCCACAGTACCTAATGCCAAGGAGTTTGCTGACTGGGTAGCAAAGATTCATCATCAGCCTTGTCACATAGTTTACACAGATTATCGACCAACACCCCTTCAACACTACATTTTTCCTTCAGGAGGTGATGGTCTATATTTGGTTGTTGATGAGAAAGGCAAGTTTCGTGAGGATAGTTTTCAGAAATCATTGAACGCTCTCGTTCCTGCTAAAGAAGGGGATAGAAAAAGGGATTTTGGGAAATTGCAGAAGGCGCTGCTGGAAGGAAAATCCAGTGAAGATAGTGACATTTTTAAGCTGGTGAAAATGCTAATCCAGCGCCAATATGATCCTATTATACTTTTCAGCTTTAGCAAGAGAGAATGTGAGTTTCTTGCAATGCAGATGGCCAAAATGGACTTAAATGATGACCAGGAGAAGACAAATATTGAGACCATCTTTTGGTGTGCAATGGATTTGCTTTCTGATGATGACAAGAAGCTTCCTCAGGTTGCTAACATTCTTCCCTTATTAAAACGTGGCATTGGGGTGCATCATTCTGGCCTACTCCCAATCCTGAAGGAAGTAATTGAAATACTCTTTCAAGAAGGTCTAATTAAGTGTTTGTTTGCTACAGAGACATTCAGTATAGGTTTGAATATGCCTGCAAAAACTGTAGTGTTTACGAATGTTCGTAAATTTGATGGGGATAAATTCAGATGGTTGTCCAGTGGGGAGTATATCCAAATGAGTGGTCGTGCTGGTCGTCGAGGCATTGATCAGCGTGGTATTTGCATTCTTATGGTTGATGAAAAAATGGAGCCTTCAACTGCAAAAGGGATGCTAAAAGGAAGTGCTGACTGCTTAAACAGTGCCTTCCATTTGAGCTACAATATGCTATTAAATCAAATGCGATGTGAAGACGGTGATCCTGAGAAACTTCTCCGACATTCATTCTATCAGTTTCAAACTGATCGTGCTCTTCCTGATTTAGAGAAACAAGTAAAGGAATTGGTTGAAGAGAGGGACTCTATTGTCATAGAAGAAGAAGAGAGTCTCAAGGACTACTACAATCTATTGCAGCAATATAGAAGCCTGAAGAAAGATGTGCAAGATATTGTGCTTGCTCCAAAGTATTGTCTGCCATACCTTCAACCTGGCAGACTAGTGTCTCTGTTGCCTGCTAGGAAGGACAAAGGGCCTTCATTTTGTGTACAAGAACAAGTTACTTGGGGAATAATACTTAATTTCCAAAAGATTAACAGCGTTGATGAAGATAAAAAACTTGAGGATTCACAGTACACCATTGATGTCTTGACAAAGTGTGCGGTTGTTAGAGAACCAAGCGGAAAGAAATCTATTAAAATAGTTCATCTTAAAGAGGAGGGAGAGCCTATTGCTATATCAGTTTCTCTCTCTCAGGTTCAAGGTTTGAGCGTTGTTCGTCTTTACATACCTAAGGATCTTGTGCCTTTAGAAGTTCGAGCAAACACTCTCAAGATTCTTTCTGAAGTCTATTCTAGATTTTTAAAGGATGGAATTCCCCTTTTAGATCCTGAAGAAGATATGAAAATACAAAGCAGCTCGTATAAAAAATCTGTCAGAAGGATTGAGGCCTTAGAAAGGTTATTTGAGAAACATGAGATTAGAAATTCACCACTGATTCAACAAAACCTGCAAGTATTACATGATAAACAAGAATTATCGGCCAAGATCAAATTATATAAGAAATCAATGCGTTCTTCCACTGTTTTGGCCTTCAAAGATGAACTCAAGGCACGCAAAAGGGTTCTTCGAAGATTAGGCTACATTACCAGTGAGGATGTTGTAGAGGTAAAGGGTCAAGTTGCCTGTGAGATTAGCTCGGCTGATGAATTGACACTAACCGAGCTCATATTCAGCGGTGTTTTTAAGGATATTGGTGTCGAAGAAATGGTAGCTCTTCTCTCATGTTTTGTCTGGCAAGAGAAACTCCAGGATGCTTGCAAACCAAGGGAAGAGCTTGAGTCTCTTTTTTCTCTGCTTCAAGAAACAGCAAGGAGGGTTGCCAATGTCCAGTTAGACTGCAAGGTGCAAGTGAACGTCGAGAATTTTGCGAGCTCCTTCCGTTCCGACATCATGGAAGCAGTTTATGCTTGGGCGAAGGGATCCAAGTTCTTTGAGATCATGGAACTCTCCTCGGTTTTTGAAGGCAGTTTGATTAGGGCCATCAGAAGGCTGGAGGAGGTCTTGCAGCAGCTGACTATTGCTGCCAAATCAATAGGGGAAACCGAGCTGGAACTCAAGTTTCAAGAGGCTGTCCTGAAGATCAAGCGCGATATTGTTTTTGCTGCTTCCCTATACTTGTAGTTGTTCGTTAAAATGATTGGGGAAATTTCATGTATACCCCTCAAAATTTTTTCGCCTTTAATTCGATGGATGCAAAACTACTTTCTTCCAGTTAATCATTGAAAGTGAGTTATATTCTTTGGACAGTGAAGTTGGGAGGTAGTTCTGTAATAGTTGAAATTTGGGTTTCATATATATAATTACCTTGGATTTTGATGTAATTCTAGTAATTATTTCTTAAAATTAATTCTTGATAGTTTGCTTTACATGTACTTTATTATTATTATTATTATT

Network for GWHGAAEX009506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	75	222	9.90E-19
PF00271.30	Helicase_C	388	467	1.70E-05
PF13234.5	rRNA_proc-arch	521	789	2.90E-70
PF08148.11	DSHCT	817	986	2.00E-49

Protein Sequence

>GWHPAAEX009506
MSLLMKRNSIDGSFPATPMPHKLQKTDDQILINEPVACLHDVSYPEGYAISRSGLPRSTGGTRKPAKEFPFELDPFQSEAIRCIENGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVVYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEILREVAWIIFDEVHYMRDRERGVVWEESIVMAPMNSRFVFLSATVPNAKEFADWVAKIHHQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPAKEGDRKRDFGKLQKALLEGKSSEDSDIFKLVKMLIQRQYDPIILFSFSKRECEFLAMQMAKMDLNDDQEKTNIETIFWCAMDLLSDDDKKLPQVANILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDQRGICILMVDEKMEPSTAKGMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPEKLLRHSFYQFQTDRALPDLEKQVKELVEERDSIVIEEEESLKDYYNLLQQYRSLKKDVQDIVLAPKYCLPYLQPGRLVSLLPARKDKGPSFCVQEQVTWGIILNFQKINSVDEDKKLEDSQYTIDVLTKCAVVREPSGKKSIKIVHLKEEGEPIAISVSLSQVQGLSVVRLYIPKDLVPLEVRANTLKILSEVYSRFLKDGIPLLDPEEDMKIQSSSYKKSVRRIEALERLFEKHEIRNSPLIQQNLQVLHDKQELSAKIKLYKKSMRSSTVLAFKDELKARKRVLRRLGYITSEDVVEVKGQVACEISSADELTLTELIFSGVFKDIGVEEMVALLSCFVWQEKLQDACKPREELESLFSLLQETARRVANVQLDCKVQVNVENFASSFRSDIMEAVYAWAKGSKFFEIMELSSVFEGSLIRAIRRLEEVLQQLTIAAKSIGETELELKFQEAVLKIKRDIVFAASLYL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12598	MTR4, SKIV2L2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006401	Biological Process	RNA catabolic process
GO:0005524	Molecular Function	ATP binding
GO:0003723	Molecular Function	RNA binding
GO:0003724	Molecular Function	RNA helicase activity
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.320
SRP064423	SRR2545915	Juvenile tuber	30.430
SRP108465	SRR5643513	five period of Gastrodia elata	17.150
	SRR5643514	five period of Gastrodia elata	16.080
	SRR5643515	five period of Gastrodia elata	18.170
	SRR5643524	five period of Gastrodia elata	16.470
	SRR5643525	five period of Gastrodia elata	17.990
	SRR5643528	five period of Gastrodia elata	19.410
	SRR5643658	five period of Gastrodia elata	14.820
	SRR5643659	five period of Gastrodia elata	32.760
	SRR5643660	five period of Gastrodia elata	27.600
	SRR5643661	five period of Gastrodia elata	25.260
	SRR5643662	five period of Gastrodia elata	34.090
	SRR5643663	five period of Gastrodia elata	36.550
	SRR5643664	five period of Gastrodia elata	33.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.630
SRP279888	Gastro	Gastrodia elata tuber	27.10
	Juven	Juvenile tuber	30.24
	Mother_Gastro	Mother tuber of Gastrodia elata	18.53
	Mother_Juven	Mother tuber of Juvenile	25.84