Detail information of GWHGAAEX009515/evm.TU.scaffold_25.113


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|89901799|ref|YP_524270.1|1.00E-63DEAD/DEAH box helicase-like protein [Albidiferax ferrireducens T118]
KOGKOG03310ATP-dependent RNA helicase
nrgi|743769579|ref|XP_010915082.1|0PREDICTED: DEAD-box ATP-dependent RNA helicase 39 isoform X2 [Elaeis guineensis]
Swissprottr|Q5VRY0|RH39_ORYSJ0DEAD-box ATP-dependent RNA helicase 39
trEMBLtr|V4SJ90|V4SJ90_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR47783.1}
TAIRAT4G097300RH39

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003035421643568242-
Transcript Sequence

Network for GWHGAAEX009515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD1453285.30E-41
PF00271.30Helicase_C3644751.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.910
SRR2545915Juvenile tuber15.870
SRP108465SRR5643513five period of Gastrodia elata9.230
SRR5643514five period of Gastrodia elata11.430
SRR5643515five period of Gastrodia elata9.040
SRR5643524five period of Gastrodia elata8.910
SRR5643525five period of Gastrodia elata9.850
SRR5643528five period of Gastrodia elata7.190
SRR5643658five period of Gastrodia elata8.170
SRR5643659five period of Gastrodia elata13.630
SRR5643660five period of Gastrodia elata14.760
SRR5643661five period of Gastrodia elata16.730
SRR5643662five period of Gastrodia elata16.120
SRR5643663five period of Gastrodia elata14.920
SRR5643664five period of Gastrodia elata17.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.190
SRR6049655Rhizomagastrodiae_C368-T10_good_110.110
SRR6049656Rhizomagastrodiae_C368-T07_good_111.340
SRR6049657Rhizomagastrodiae_C368-T07_good_110.860
SRR6049658Rhizomagastrodiae_C368-T04_good_18.170
SRR6049659Rhizomagastrodiae_C368-T04_good_19.670
SRR6049660Rhizomagastrodiae_C368-T01_good_111.820
SRR6049661Rhizomagastrodiae_C368-T04_good_110.860
SRR6049662Rhizomagastrodiae_C368-T01_good_111.560
SRR6049663Rhizomagastrodiae_C368-T01_good_110.110
SRR6049664Rhizomagastrodiae_C368-T10_good_110.850
SRR6049665Rhizomagastrodiae_C368-T10_good_110.850
SRP279888GastroGastrodia elata tuber 18.94
JuvenJuvenile tuber22.81
Mother_GastroMother tuber of Gastrodia elata 6.79
Mother_JuvenMother tuber of Juvenile 14.46