Detail information of GWHGAAEX009516/evm.TU.scaffold_25.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|254293472|ref|YP_003059495.1| | 7.00E-21 | cation diffusion facilitator family transporter [Hirschia baltica ATCC 49814] |
| KOG | KOG1484 | 3.00E-73 | Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) |
| nr | gi|743766430|ref|XP_010913456.1| | 0 | PREDICTED: uncharacterized protein LOC105039137 [Elaeis guineensis] |
| Swissprot | tr|Q9SI03|MTP12_ARATH | 9.00E-74 | Metal tolerance protein 12 |
| trEMBL | tr|A0A068U0W2|A0A068U0W2_COFCA | 6.00E-169 | Coffea canephora |
| TAIR | AT2G04620 | 3.00E-73 | Cation efflux family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3587924 | 3590833 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009516
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01545.20 | Cation_efflux | 359 | 644 | 2.10E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.530 |
| SRR2545915 | Juvenile tuber | 12.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.430 |
| SRR5643514 | five period of Gastrodia elata | 14.650 | |
| SRR5643515 | five period of Gastrodia elata | 16.130 | |
| SRR5643524 | five period of Gastrodia elata | 13.850 | |
| SRR5643525 | five period of Gastrodia elata | 22.260 | |
| SRR5643528 | five period of Gastrodia elata | 17.350 | |
| SRR5643658 | five period of Gastrodia elata | 14.330 | |
| SRR5643659 | five period of Gastrodia elata | 20.660 | |
| SRR5643660 | five period of Gastrodia elata | 21.190 | |
| SRR5643661 | five period of Gastrodia elata | 20.010 | |
| SRR5643662 | five period of Gastrodia elata | 18.890 | |
| SRR5643663 | five period of Gastrodia elata | 21.230 | |
| SRR5643664 | five period of Gastrodia elata | 16.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.72 |
| Juven | Juvenile tuber | 16.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.46 | |
| Mother_Juven | Mother tuber of Juvenile | 15.38 |