Detail information of GWHGAAEX009517/evm.TU.scaffold_25.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332664229|ref|YP_004447017.1| | 1.00E-21 | (myosin heavy-chain) kinase [Haliscomenobacter hydrossis DSM 1100] |
| KOG | KOG0266 | 0 | WD40 repeat-containing protein |
| nr | gi|743846533|ref|XP_010938862.1| | 0 | PREDICTED: LEC14B protein-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q40153|LE14B_LITER | 0 | LEC14B protein |
| trEMBL | tr|M0RHN2|M0RHN2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P12560_001} |
| TAIR | AT4G03020 | 0 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3615392 | 3641747 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009517
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 250 | 283 | 0.0015 |
| PF00400.31 | WD40 | 295 | 329 | 0.00063 |
| PF00400.31 | WD40 | 367 | 410 | 0.093 |
| PF00400.31 | WD40 | 417 | 448 | 0.0042 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.700 |
| SRR2545915 | Juvenile tuber | 6.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.900 |
| SRR5643514 | five period of Gastrodia elata | 13.230 | |
| SRR5643515 | five period of Gastrodia elata | 10.480 | |
| SRR5643524 | five period of Gastrodia elata | 12.620 | |
| SRR5643525 | five period of Gastrodia elata | 3.030 | |
| SRR5643528 | five period of Gastrodia elata | 3.030 | |
| SRR5643658 | five period of Gastrodia elata | 3.880 | |
| SRR5643659 | five period of Gastrodia elata | 6.490 | |
| SRR5643660 | five period of Gastrodia elata | 4.890 | |
| SRR5643661 | five period of Gastrodia elata | 5.010 | |
| SRR5643662 | five period of Gastrodia elata | 2.000 | |
| SRR5643663 | five period of Gastrodia elata | 3.860 | |
| SRR5643664 | five period of Gastrodia elata | 2.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.01 |
| Juven | Juvenile tuber | 8.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.13 | |
| Mother_Juven | Mother tuber of Juvenile | 4.82 |