Detail information of GWHGAAEX009518/evm.TU.scaffold_25.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390951925|ref|YP_006415684.1| | 2.00E-26 | cysteine protease [Thiocystis violascens DSM 198] |
| KOG | KOG1543 | 5.00E-151 | Cysteine proteinase Cathepsin L |
| nr | gi|743790814|ref|XP_010923265.1| | 0 | PREDICTED: zingipain-2 [Elaeis guineensis] |
| Swissprot | tr|P25776|ORYA_ORYSJ | 9.00E-130 | Oryzain alpha chain (Precursor) |
| trEMBL | tr|M0SPT4|M0SPT4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P17710_001} |
| TAIR | AT1G09850_1 | 5.00E-151 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3706136 | 3739564 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009518
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08246.11 | Inhibitor_I29 | 28 | 85 | 1.00E-17 |
| PF00112.22 | Peptidase_C1 | 124 | 338 | 9.40E-79 |
| PF00396.17 | Granulin | 366 | 412 | 2.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.720 |
| SRR2545915 | Juvenile tuber | 15.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.710 |
| SRR5643514 | five period of Gastrodia elata | 12.080 | |
| SRR5643515 | five period of Gastrodia elata | 12.320 | |
| SRR5643524 | five period of Gastrodia elata | 14.140 | |
| SRR5643525 | five period of Gastrodia elata | 20.840 | |
| SRR5643528 | five period of Gastrodia elata | 16.460 | |
| SRR5643658 | five period of Gastrodia elata | 15.810 | |
| SRR5643659 | five period of Gastrodia elata | 7.430 | |
| SRR5643660 | five period of Gastrodia elata | 7.210 | |
| SRR5643661 | five period of Gastrodia elata | 7.990 | |
| SRR5643662 | five period of Gastrodia elata | 6.240 | |
| SRR5643663 | five period of Gastrodia elata | 6.870 | |
| SRR5643664 | five period of Gastrodia elata | 6.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.17 |
| Juven | Juvenile tuber | 16.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.90 | |
| Mother_Juven | Mother tuber of Juvenile | 15.67 |