Detail information of GWHGAAEX009519/evm.TU.scaffold_25.118
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2393 | 0 | Transcription initiation factor IIF, large subunit (RAP74) |
| nr | gi|115481346|ref|NP_001064266.1| | 0 | Os10g0188100 [Oryza sativa Japonica Group] |
| Swissprot | tr|Q9SU25|T2FA_ARATH | 0 | Transcription initiation factor IIF subunit alpha |
| trEMBL | tr|Q53QT1|Q53QT1_ORYSJ | 0 | cDNA, clone: J100012M17, full insert sequence {ECO:0000313|EMBL:BAH01427.1} |
| TAIR | AT4G12610 | 0 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3789551 | 3825025 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009519
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05793.11 | TFIIF_alpha | 48 | 536 | 8.20E-128 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03138 | TFIIF1, GTF2F1, TFG1 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032968 | Biological Process | positive regulation of transcription elongation from RNA polymerase II promoter |
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.770 |
| SRR2545915 | Juvenile tuber | 47.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.200 |
| SRR5643514 | five period of Gastrodia elata | 45.650 | |
| SRR5643515 | five period of Gastrodia elata | 41.170 | |
| SRR5643524 | five period of Gastrodia elata | 45.330 | |
| SRR5643525 | five period of Gastrodia elata | 40.470 | |
| SRR5643528 | five period of Gastrodia elata | 34.600 | |
| SRR5643658 | five period of Gastrodia elata | 57.140 | |
| SRR5643659 | five period of Gastrodia elata | 34.620 | |
| SRR5643660 | five period of Gastrodia elata | 36.660 | |
| SRR5643661 | five period of Gastrodia elata | 33.750 | |
| SRR5643662 | five period of Gastrodia elata | 29.670 | |
| SRR5643663 | five period of Gastrodia elata | 32.720 | |
| SRR5643664 | five period of Gastrodia elata | 31.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 48.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.01 |
| Juven | Juvenile tuber | 66.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.67 | |
| Mother_Juven | Mother tuber of Juvenile | 69.71 |