Gene detail

Detail information of GWHGAAEX009521/evm.TU.scaffold_25.120

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1860	2.00E-158	Nuclear protein export factor
nr	gi\|672142469\|ref\|XP_008795090.1\|	0	PREDICTED: uncharacterized protein LOC103710934 isoform X3 [Phoenix dactylifera]
trEMBL	tr\|B9RSV1\|B9RSV1_RICCO	0	80 kD MCM3-associated protein, putative {ECO:0000313\|EMBL:EEF45434.1}
TAIR	AT3G06290	2.00E-158	SAC3/GANP/Nin1/mts3/eIF-3 p25 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	3832697	3859147	+

Transcript Sequence
>GWHTAAEX009521 TGAAGACGAACCATCCGTGGCCTGATTTAAAAAATAATATATGCTGTATATATATTGTTAAAAAAAAAGCTATATTTATATAACGAGCTACTTCCGGACAAAAAATCAGTGACGCCGAGGGCTGCGGATGTCCGCCGAACTAGGGCAGAAACTTGCGGGGGAAGCAGACCAATAAGCTTCGGCGAGGCAGCAAAACTGCTAATATTGTCAAGACAGTGATCTTCAGAGCCGAGGAAGTTTGTTGCTGTCGTTGTGTGAAGGAGCTTGCGCAGCATCCGGGGATCGACCTAGCCGTCGCTGCGGAGTGGGGCGTATCAGTAGCTGTAGAGCGATCCCAAAATCATTATTTCCTTGCAAGCGTGTGAGGATCTTATTTCTTCCTTCCATGTCGTTTTCTGGATTTGGCAAAAGTTCTGGTCCCTCCATTCCACCAACAACCCAGAAGACGTTTGGAAGTGCCTCTGCGTTTCCCTGGATACCTCCGATTTCTAATCCTAATTTACCGACCGTCTCCGAAATTATCCAAAAAGTAGACCTAGTGCCGTTGCATCAACTGACCCCCTCTCCAGCAAAAACATTTGATTCATCCTTTAATAAGTTGACAAGGCAAAGGATCTCTCCACCCCACAGTGATGTCTCTCATAATATGCTTGACCACACTAATTCTAAATTTGTTGCACAACATGACGCAACATCTATCACAGGAAAGCCTGCTTACCTTGTTACTCCTAAAAGGGCCAGGTCTCCTATTGAATCTGATGAAAACCATTTACCTTGCTCATATACCTTACCTGATTTTGAAAGGGAAAAACAAGCAAAGGCAAAGCGATTAGCTCGCTTCCATACTGAATTAACCCAGCCATTACAGAATCTGCAGGACCTTACTAGGGGTAAACCTATTGGGAATAAACCAAACCAAATTTCCTTATTCCAGCAGAAAGCTGGTGAACATGCTGAAAATACAACTTTTGGAGGCAGTTTGTTAGATCCTGGTGGTGCTGAATCAACAAAAGCTGTGATTGGTCTGTGCCCAGATATGTGCCCAGAATTGGAGAGGGATGAACGTGAAAGAAAGGGTGATCTTGATAACCATGAGCGCTTGAATGGAGATAGGAATCAAACAAGCAAGTTTATTGCTGTTAAAAAATATAATAGATTGGCAGAGCGTGAAGCTGAGTTGATAAGGCCTATGCCTGTATTGCTGAAGACAGTTGATTATCTCTTAAGTTTGTTGGATCAACCTTATGATGGTAATTTTCTTTATCTCTACAACTTCTTGTGGGATAGAATGCGGGCAGTACGGATGGACCTGAGGATGCAACATATTTTCAATGAAGATGCTATTCTCCTGCTAGAACAAATGATAAGGCTTCATGTGATTGCTATGCATGAATTATGTGAGTTTGAGAAAGGCGAGGGTTTTACAGAAGGTTTTGATGCACACCTCAATATTGAGCAAATGAATAAAACCTCAGTTGAGTTATTTCAGCTATATGATGACCATAGAAAGCAGGGAAAAAGTTTTGCATCAGAAAAAGAATTCAGGGGATATTATGCGCTTTTGAAGTTAGATAAGCATCCTGGTTACAAAGTAGAACCAGCAGAGCTATCACTTGATCTTGCCAAGATGGCTCCTGAAATACGGAGTAGCCCTGAAATTTTATTTGCTCGAGATGTTGCAAGAGCTTGTAGGATTGGCAACTATGTTTCATTTTTTAGGCTTGCTAGAAAAGCAACTTATCTTCAGGCTTGCTTAATGCATGCTCATTTTTCCAAGCTGAGGAAGCAGGCCCTTGATTCCTTACATAGCGGTCTTCAGAATAACCAAGGGGTTCCTATTGCGCATGTTGAAAAATGTCTGGCTATGGAGGGGGAGGATGTCGTGGGTCTATTGAAATATCATGGGTTCTCAATAAGAAAATATGAAGAAGTTTACATGGTGAAAGAGGGCCCCTTTCTTAGCAGTGACGTGGATTTCCCAACAAGATGTGCTCAACTTGTTCAGCACAAGAGATCGAAGTATATAGTCAGTGATGTTAGATCTACTTTAACCCTTGAACGGCATTCTGCAGAAAAGGAATGTCCAAACAATAGTGTAGATATTTTTGACCATAGAAATTTTGTAAAAACTGAAATTCAATTGGCTGCTGCTTATGATGAAATAATGTCAGATAACATTATTAAATCTGCACCTATCGTTATAGCTGACCCTTCAGGTTTGTTTGAAGAGAAACTGCCATTTATCCCAAATAGAGAAAGTAAGGTGAAATTGGCAGAAATGCCTGTCGGGATGGAAGCATTTGTTCCTCCAATTGGGCATATTGGTGGCTATGCTCAACAAGATGATAGCCAACAAAAAGTTTACCATGATAATAAAGATTTATTTAATGAAGCAACATCACTAATTTTAGAGAACAGTAAGAACCACCAACCCACTGTTCATGATAGCTTTAGTTCTAGCTCTCACATGATGTATGAATATTTGACCTCTAAAGAGTCTGAAAATCAGGAGCTTGAGAGTGAGTCTGCTCCTCCTTTACTTGCTCTGCAGGCGAAAGCTATAAAGGATATTTTGAAGCGTATCTTAAGGAAATGGAGAAGGCAGGCAGCAACAAGGAGAAGGAACAGGGAACAGGAAATATATCTTGCTGGCACAGCACTGAGTTCGCTGTCATTAGGACCCCCTATTGTTCAAATTGAATCTCAAACGTGGTCCTCTGAAAATTTTGATATTGAAGCTATCACAAGAGCTAGACTTGGAAAATATGATCACTCATGGTCAAGGTTGAACATATCTGATTTGGTTTTTCCAATTATGGCTGAAAAAAACCCGAGTGTTAGATGCATTTGCTGGAAGTTGGTCCTTCTGGTCCAACCGGTTGCTTCTGATAACCAAATCTATCTATCAGCCACAGATTGGTTGTTCTTCAAGCTATTGGGTCCCAGTACTTTTCATGATGCTGACTTGGCGGTCTGCTCGCCAGGCTTGTCAATATGGAAGAAATGGAGTGATCCCTGTAAAATCTCTCCCCCAATCTGCTGCTTGTCCATCGTTAGAGGAAAGGCTATAGATGATATGCATCAAATAGAAAGGGATGTTCTCAACGGTGCAGACTGTTTGGTATACCTTGTATCGGAGACCATTCCATGGAGTGTTCAACGAGCTCGACTTCAAAATGTTTTGGCATCGATACCACCTGGATCTAACTTTCCTCTTCTAATACTGAGTGCCGTTTCACCTAGTAGTGAGGCCGCTGAAGGATCACTCGATATCATTAAAAGACTGGCACTTAACGAAGAAAAGAAAAATATGAGAACCCACCCTTCTTCAGTATTCTTTCTCGCCAAAAACAGCTGCTTGAACGGTTCGCACGGCTTCTTTGATGATCATCAATTGAGAATGGGCTTACAGTGGCTGGCGAATAATGTTCCTTCCGCCCCTTTGCTCCGCCCCATCAAAACTCGTGAACTTGTTCTAAATCATTTGCGACAATACGTCGATGCCGCTTCAAAGCAAAAGGAATTTGATGTGGCTCCAAATGACTGCATAGCTGTATTTAATAAAGCCTTGGGTGAATCAGCAAACGAAATCATAGCTACAGCATCCATGGATCCTGCTGCACACTGGCCAGCTCCTGAAATATATTTAGTTCATGCAGCTAGCGAGGAGGGAATATTGGCAGGTCGATGCTTTCCTACTGCGGGCTGGAACTCTCCCACAAGAATCAACACCATCATCCAAGCTATTGAAGCCTGCAAGCTTCCGAGCTTTCCTTGCACATCCCGGCTGGAGCACGAGCCACTTGCCGGTGAGCGGATCAGGCAGCAGGCTTTGGTGCTGGAAGAACTCTTGGTTCACTTTCTGAATGGGCTGAACGGATTGCTGAAGGCTGATGCAGCTGCATTGGAGTCCGGCTACATGTTGCAGCATTGTGTTGGTCTTCGGCCGTGCGAGTTGGGCTACTGCCTTGCTCCGAGATGGATGTTCATCTTTCAGAGAATTTACTCTTGGCAGTTAAATAGACTGATGGTTCCGGGGATAACTGATGCTTACGTGAAGTGCGGCGGTGCTTTGAATGATCTTTGTTTATCGATTCATTCTCAGTCTGCTGACGTTACTCTTGATGAATTAATCGAGCTAAGCTGCAGCAATAATCCTTTTGAAAGAAGGCCTGTTTTGGGGGCCATTGCTAGGGGTAGTACACGTGACAATGGCACAGTATCAAGAACAGATGTTTGGGATGACGAGGATCTCAGATGCAGCAGTTCTTCCTTTGTGCCGCATATGAATGCGGACAGACAAACTGAAGCAGCCCCAATTGCTTCTAGTTGTGAAAGGCTCACTATGCTACTGGAGAAGTGTAACAGGCTGCAAGACAAGATAGACCAAAAGCTGGCCATCTATTTTTGAATATATATATATATATAT

Network for GWHGAAEX009521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03399.15	SAC3_GANP	213	511	1.20E-82

Protein Sequence

>GWHPAAEX009521
MSFSGFGKSSGPSIPPTTQKTFGSASAFPWIPPISNPNLPTVSEIIQKVDLVPLHQLTPSPAKTFDSSFNKLTRQRISPPHSDVSHNMLDHTNSKFVAQHDATSITGKPAYLVTPKRARSPIESDENHLPCSYTLPDFEREKQAKAKRLARFHTELTQPLQNLQDLTRGKPIGNKPNQISLFQQKAGEHAENTTFGGSLLDPGGAESTKAVIGLCPDMCPELERDERERKGDLDNHERLNGDRNQTSKFIAVKKYNRLAEREAELIRPMPVLLKTVDYLLSLLDQPYDGNFLYLYNFLWDRMRAVRMDLRMQHIFNEDAILLLEQMIRLHVIAMHELCEFEKGEGFTEGFDAHLNIEQMNKTSVELFQLYDDHRKQGKSFASEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMAPEIRSSPEILFARDVARACRIGNYVSFFRLARKATYLQACLMHAHFSKLRKQALDSLHSGLQNNQGVPIAHVEKCLAMEGEDVVGLLKYHGFSIRKYEEVYMVKEGPFLSSDVDFPTRCAQLVQHKRSKYIVSDVRSTLTLERHSAEKECPNNSVDIFDHRNFVKTEIQLAAAYDEIMSDNIIKSAPIVIADPSGLFEEKLPFIPNRESKVKLAEMPVGMEAFVPPIGHIGGYAQQDDSQQKVYHDNKDLFNEATSLILENSKNHQPTVHDSFSSSSHMMYEYLTSKESENQELESESAPPLLALQAKAIKDILKRILRKWRRQAATRRRNREQEIYLAGTALSSLSLGPPIVQIESQTWSSENFDIEAITRARLGKYDHSWSRLNISDLVFPIMAEKNPSVRCICWKLVLLVQPVASDNQIYLSATDWLFFKLLGPSTFHDADLAVCSPGLSIWKKWSDPCKISPPICCLSIVRGKAIDDMHQIERDVLNGADCLVYLVSETIPWSVQRARLQNVLASIPPGSNFPLLILSAVSPSSEAAEGSLDIIKRLALNEEKKNMRTHPSSVFFLAKNSCLNGSHGFFDDHQLRMGLQWLANNVPSAPLLRPIKTRELVLNHLRQYVDAASKQKEFDVAPNDCIAVFNKALGESANEIIATASMDPAAHWPAPEIYLVHAASEEGILAGRCFPTAGWNSPTRINTIIQAIEACKLPSFPCTSRLEHEPLAGERIRQQALVLEELLVHFLNGLNGLLKADAAALESGYMLQHCVGLRPCELGYCLAPRWMFIFQRIYSWQLNRLMVPGITDAYVKCGGALNDLCLSIHSQSADVTLDELIELSCSNNPFERRPVLGAIARGSTRDNGTVSRTDVWDDEDLRCSSSSFVPHMNADRQTEAAPIASSCERLTMLLEKCNRLQDKIDQKLAIYF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.360
SRP064423	SRR2545915	Juvenile tuber	16.210
SRP108465	SRR5643513	five period of Gastrodia elata	12.130
	SRR5643514	five period of Gastrodia elata	11.340
	SRR5643515	five period of Gastrodia elata	11.150
	SRR5643524	five period of Gastrodia elata	11.420
	SRR5643525	five period of Gastrodia elata	12.880
	SRR5643528	five period of Gastrodia elata	9.640
	SRR5643658	five period of Gastrodia elata	12.530
	SRR5643659	five period of Gastrodia elata	13.590
	SRR5643660	five period of Gastrodia elata	15.700
	SRR5643661	five period of Gastrodia elata	13.070
	SRR5643662	five period of Gastrodia elata	13.300
	SRR5643663	five period of Gastrodia elata	14.860
	SRR5643664	five period of Gastrodia elata	15.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.980
SRP279888	Gastro	Gastrodia elata tuber	20.92
	Juven	Juvenile tuber	26.08
	Mother_Gastro	Mother tuber of Gastrodia elata	19.43
	Mother_Juven	Mother tuber of Juvenile	27.40