Detail information of GWHGAAEX009522/evm.TU.scaffold_25.122
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0788 | 2.00E-103 | S-adenosylmethionine decarboxylase |
| nr | gi|672183439|ref|XP_008811998.1| | 1.46E-119 | PREDICTED: S-adenosylmethionine decarboxylase proenzyme 3-like [Phoenix dactylifera] |
| Swissprot | tr|Q3E9D5|DCAM4_ARATH | 7.00E-104 | S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250|UniProtKB:P17707} (Precursor) |
| trEMBL | tr|W9RS05|W9RS05_9ROSA | 2.00E-115 | S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|PIRNR:PIRNR001355} |
| TAIR | AT5G18930 | 2.00E-103 | Adenosylmethionine decarboxylase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 3947594 | 3949007 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009522
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01536.15 | SAM_decarbox | 6 | 296 | 2.80E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01611 | speD, AMD1 | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008295 | Biological Process | spermidine biosynthetic process |
| GO:0006597 | Biological Process | spermine biosynthetic process |
| GO:0004014 | Molecular Function | adenosylmethionine decarboxylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.180 |
| SRR5643514 | five period of Gastrodia elata | 1.190 | |
| SRR5643515 | five period of Gastrodia elata | 0.160 | |
| SRR5643524 | five period of Gastrodia elata | 0.390 | |
| SRR5643525 | five period of Gastrodia elata | 1.540 | |
| SRR5643528 | five period of Gastrodia elata | 0.830 | |
| SRR5643658 | five period of Gastrodia elata | 4.200 | |
| SRR5643659 | five period of Gastrodia elata | 0.670 | |
| SRR5643660 | five period of Gastrodia elata | 0.050 | |
| SRR5643661 | five period of Gastrodia elata | 0.110 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.320 | |
| SRR5643664 | five period of Gastrodia elata | 0.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.34 |
| Juven | Juvenile tuber | 1.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.22 | |
| Mother_Juven | Mother tuber of Juvenile | 0.25 |