Detail information of GWHGAAEX009536/evm.TU.scaffold_25.142
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 4.00E-15 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| KOG | KOG0619 | 2.00E-174 | FOG: Leucine rich repeat |
| nr | gi|672146769|ref|XP_008797062.1| | 0 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZQQ7|Y2144_ARATH | 6.00E-50 | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 (Precursor) |
| trEMBL | tr|M0RTU1|M0RTU1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P20110_001} |
| TAIR | AT3G05990 | 2.00E-174 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 4572601 | 4589822 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009536
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12819.6 | Malectin_like | 31 | 348 | 4.80E-61 |
| PF08263.11 | LRRNT_2 | 360 | 396 | 5.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.780 |
| SRR2545915 | Juvenile tuber | 8.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.960 |
| SRR5643514 | five period of Gastrodia elata | 15.850 | |
| SRR5643515 | five period of Gastrodia elata | 17.590 | |
| SRR5643524 | five period of Gastrodia elata | 13.840 | |
| SRR5643525 | five period of Gastrodia elata | 36.370 | |
| SRR5643528 | five period of Gastrodia elata | 41.460 | |
| SRR5643658 | five period of Gastrodia elata | 40.370 | |
| SRR5643659 | five period of Gastrodia elata | 14.590 | |
| SRR5643660 | five period of Gastrodia elata | 17.340 | |
| SRR5643661 | five period of Gastrodia elata | 17.460 | |
| SRR5643662 | five period of Gastrodia elata | 16.700 | |
| SRR5643663 | five period of Gastrodia elata | 18.440 | |
| SRR5643664 | five period of Gastrodia elata | 16.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.19 |
| Juven | Juvenile tuber | 20.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.13 | |
| Mother_Juven | Mother tuber of Juvenile | 41.76 |